Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_I01
(874 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 215 7e-57
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 35 0.013
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo... 34 0.030
SPAC22E12.06c |gmh3||alpha-1,2-galactosyltransferase Gmh3|Schizo... 29 0.65
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 29 0.65
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 29 0.65
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 29 0.86
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 28 1.5
SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomy... 27 4.6
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c... 26 8.1
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 8.1
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 215 bits (525), Expect = 7e-57
Identities = 95/131 (72%), Positives = 112/131 (85%)
Frame = +2
Query: 74 SVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSS 253
S K+DTA WPLLLKNFD+L VRT HYTP+P GN+PLKRPI++YV SG IN+DKP+NPSS
Sbjct: 18 SASKIDTAEWPLLLKNFDKLLVRTGHYTPIPCGNNPLKRPIAEYVSSGVINLDKPANPSS 77
Query: 254 HEVVSWIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSA 433
HEVV+W+K+IL+VEKTGHSGTLDPKVTGCLI+C DRATRLVKSQQ+AGKEYV V LH +
Sbjct: 78 HEVVAWVKKILRVEKTGHSGTLDPKVTGCLIICNDRATRLVKSQQSAGKEYVCVLRLHDS 137
Query: 434 VENIQKVTQGL 466
VE + V +
Sbjct: 138 VEGERNVASAI 148
Score = 68.9 bits (161), Expect = 9e-13
Identities = 38/78 (48%), Positives = 50/78 (64%)
Frame = +3
Query: 465 LEKLRGALFQRPPLISAVKRQLRVRTVYDSKLLDFDHGQEYWGVLGFSCXGWIXYSGRCV 644
+E L GALFQRPPLISAVKRQLR+R++Y+SKL++FD+ + V SC CV
Sbjct: 148 IETLTGALFQRPPLISAVKRQLRIRSIYESKLIEFDN-ERNLAVFWASCEAGTYMRTLCV 206
Query: 645 CXXV*XLGVGGXIIXVXR 698
+ LGVGG + + R
Sbjct: 207 HLGL-LLGVGGHMQELRR 223
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 35.1 bits (77), Expect = 0.013
Identities = 25/81 (30%), Positives = 41/81 (50%)
Frame = +2
Query: 230 DKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYV 409
+KP PS H ++S+ K+E T ++ T K G IV R S +N GKE V
Sbjct: 563 EKPVKPSKHNIMSFCILQGKIEVTVNATTFRMKKDGVFIV--PRGN--YYSIKNIGKEAV 618
Query: 410 AVFNLHSAVENIQKVTQGLGE 472
++ H A + ++ +G+G+
Sbjct: 619 RLYYTH-ATDTLENKRRGIGD 638
>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 407
Score = 33.9 bits (74), Expect = 0.030
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 296 KTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVA 412
K GH GTLDP +G L+V + T+ + S + K Y A
Sbjct: 107 KIGHGGTLDPLASGVLVVGLGTGTKQLSSLLSCMKTYRA 145
>SPAC22E12.06c |gmh3||alpha-1,2-galactosyltransferase
Gmh3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 29.5 bits (63), Expect = 0.65
Identities = 23/69 (33%), Positives = 29/69 (42%)
Frame = +2
Query: 221 INVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGK 400
IN D P P SHE+V IL SG + P+ CI+ K N G
Sbjct: 76 INEDDPQEPKSHEIV-----ILLASDGRSSGNMAPETFN---QCIENRINYAK-HHNYGF 126
Query: 401 EYVAVFNLH 427
EYV V ++
Sbjct: 127 EYVNVSQMN 135
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 29.5 bits (63), Expect = 0.65
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 203 YVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHS 310
++K + +D+P+N E V+W++ L E GH+
Sbjct: 436 FIKPTLMMLDEPTNHLDLEAVAWLEEYLTHEMEGHT 471
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 29.5 bits (63), Expect = 0.65
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 104 PLLLKNFDRLNVRTNHYTPLPFGNSPLKRP 193
P+LL + N N TP PFG SP+ P
Sbjct: 259 PILLSPLNYQNSSLNPSTPSPFGGSPVMHP 288
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 29.1 bits (62), Expect = 0.86
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +2
Query: 119 NFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSSHE 259
++DR + + NH +P P +P K P+ + ++ N D + S+ +
Sbjct: 158 DYDRRSPKRNHRSPSPVSFAPQKSPVENETETNVDNGDTKISESNEK 204
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 107 LLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSG 217
+LL+ + ++T Y P+ G LKRP+SDY+ G
Sbjct: 1 MLLRPKTKFEIKT--YKPISPGLRHLKRPVSDYLWKG 35
>SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 293
Score = 26.6 bits (56), Expect = 4.6
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -2
Query: 132 KRSKFFNNKGQ*AVSSFFT 76
K+SK+F+ +G +SSFFT
Sbjct: 273 KKSKYFSGEGMTKISSFFT 291
>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
complex subunit Rrn5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 556
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3
Query: 564 DFDHGQEYWGVLGFSC 611
DFD +E WGVL SC
Sbjct: 53 DFDLEEEQWGVLSGSC 68
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +2
Query: 50 RLQNRTFESVKKLDTAYWPLLLKNF-DRLNVRTNHYTPLPFGNSPLKRPI 196
++ T + +D + + L+ NF + V+TN Y P + P PI
Sbjct: 522 KVSENTINDEELIDDSEFTSLMSNFLESSTVQTNKYLPKSSASPPANAPI 571
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,034,056
Number of Sequences: 5004
Number of extensions: 61044
Number of successful extensions: 187
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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