Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_I01
(874 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1408 - 26353389-26355191 213 2e-55
03_03_0094 + 14378953-14380728 213 2e-55
02_02_0421 - 10042184-10042197,10042442-10042822,10044158-100442... 103 2e-22
04_04_0876 - 29005543-29005630,29005841-29006596,29006939-29006955 101 8e-22
11_06_0293 + 22018128-22018556 98 7e-21
05_01_0060 - 418559-418577,418655-418738,418857-418966,419467-41... 62 4e-10
09_02_0616 + 11256242-11256430,11256981-11257225,11257317-11257878 29 6.4
03_02_0655 + 10220328-10220400,10220686-10220737,10220959-10221301 29 6.4
>07_03_1408 - 26353389-26355191
Length = 600
Score = 213 bits (519), Expect = 2e-55
Identities = 99/145 (68%), Positives = 119/145 (82%)
Frame = +2
Query: 77 VKKLDTAYWPLLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSSH 256
V LDT+ WPLLLKN+DRLNVRT HYTPLP G+SPLKRPI++Y++ G IN+DKPSNPSSH
Sbjct: 58 VPSLDTSTWPLLLKNYDRLNVRTGHYTPLPSGHSPLKRPIAEYLRYGVINLDKPSNPSSH 117
Query: 257 EVVSWIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAV 436
EVV+WIKR+L+V+KTGHSGTLDPKVTG LIVC+DRATRLVKSQQ AGKEYV V H+AV
Sbjct: 118 EVVAWIKRLLRVDKTGHSGTLDPKVTGNLIVCVDRATRLVKSQQGAGKEYVCVARFHAAV 177
Query: 437 ENIQKVTQGLGEAAWSSIPEAPAYI 511
+ +V + L EA ++ + P I
Sbjct: 178 PDTARVARAL-EALTGAVFQRPPLI 201
Score = 69.3 bits (162), Expect = 4e-12
Identities = 40/80 (50%), Positives = 48/80 (60%)
Frame = +3
Query: 459 RGLEKLRGALFQRPPLISAVKRQLRVRTVYDSKLLDFDHGQEYWGVLGFSCXGWIXYSGR 638
R LE L GA+FQRPPLISAVKRQLRVRT+Y+SKLL+ D + V SC
Sbjct: 185 RALEALTGAVFQRPPLISAVKRQLRVRTIYESKLLEHD-ADRHLAVFWISCEAGTYVRTL 243
Query: 639 CVCXXV*XLGVGGXIIXVXR 698
CV + LGVG + + R
Sbjct: 244 CVHLGL-LLGVGAHMQELRR 262
>03_03_0094 + 14378953-14380728
Length = 591
Score = 213 bits (519), Expect = 2e-55
Identities = 99/142 (69%), Positives = 118/142 (83%)
Frame = +2
Query: 86 LDTAYWPLLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSSHEVV 265
LDT+ WPLLLKN+DRLNVRT HYTPLP G+SPLKRPI++Y++ G IN+DKPSNPSSHEVV
Sbjct: 65 LDTSAWPLLLKNYDRLNVRTGHYTPLPAGHSPLKRPIAEYLRYGVINLDKPSNPSSHEVV 124
Query: 266 SWIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVENI 445
+WIKR+L+VEKTGHSGTLDPKVTG LIVC+DRATRLVKSQQ AGKEYV V H+AV +
Sbjct: 125 AWIKRLLRVEKTGHSGTLDPKVTGNLIVCVDRATRLVKSQQGAGKEYVCVARFHAAVPDT 184
Query: 446 QKVTQGLGEAAWSSIPEAPAYI 511
+V + L EA ++ + P I
Sbjct: 185 ARVARAL-EALTGAVFQRPPLI 205
Score = 69.3 bits (162), Expect = 4e-12
Identities = 40/80 (50%), Positives = 48/80 (60%)
Frame = +3
Query: 459 RGLEKLRGALFQRPPLISAVKRQLRVRTVYDSKLLDFDHGQEYWGVLGFSCXGWIXYSGR 638
R LE L GA+FQRPPLISAVKRQLRVRT+Y+SKLL+ D + V SC
Sbjct: 189 RALEALTGAVFQRPPLISAVKRQLRVRTIYESKLLEHD-ADRHLAVFWISCEAGTYVRTL 247
Query: 639 CVCXXV*XLGVGGXIIXVXR 698
CV + LGVG + + R
Sbjct: 248 CVHLGL-LLGVGAHMQELRR 266
>02_02_0421 -
10042184-10042197,10042442-10042822,10044158-10044261,
10044634-10044734,10044806-10045147,10045981-10046158,
10047696-10047776,10049190-10049449
Length = 486
Score = 103 bits (246), Expect = 2e-22
Identities = 47/79 (59%), Positives = 62/79 (78%)
Frame = +2
Query: 173 NSPLKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKVTGCLIVC 352
+SPLK+PI+ ++ G IN++KPSN SHEV++W K +L +EKT H+GTLDPKVTG LIVC
Sbjct: 17 HSPLKQPIAKHLCYGVINLNKPSNLLSHEVITWNKNLLHIEKTSHNGTLDPKVTGNLIVC 76
Query: 353 IDRATRLVKSQQNAGKEYV 409
++RATRLVKS +YV
Sbjct: 77 VNRATRLVKSWNGVMLKYV 95
>04_04_0876 - 29005543-29005630,29005841-29006596,29006939-29006955
Length = 286
Score = 101 bits (242), Expect = 8e-22
Identities = 49/78 (62%), Positives = 59/78 (75%)
Frame = +2
Query: 260 VVSWIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVE 439
VV+WIKR+L+V KTGHSGTLDPKVTG LIVC+DRATRLVKSQQ AGKEYV V H+A
Sbjct: 98 VVAWIKRLLRVNKTGHSGTLDPKVTGNLIVCVDRATRLVKSQQGAGKEYVCVARFHAA-- 155
Query: 440 NIQKVTQGLGEAAWSSIP 493
+ + + L A + +P
Sbjct: 156 DTARALEALTGAMFQRLP 173
Score = 66.5 bits (155), Expect = 3e-11
Identities = 39/80 (48%), Positives = 48/80 (60%)
Frame = +3
Query: 459 RGLEKLRGALFQRPPLISAVKRQLRVRTVYDSKLLDFDHGQEYWGVLGFSCXGWIXYSGR 638
R LE L GA+FQR PLISAVKRQLRVRT+Y+SKLL+ D + + V SC
Sbjct: 159 RALEALTGAMFQRLPLISAVKRQLRVRTIYESKLLEHD-AERHLAVFWISCEAGTYVRTL 217
Query: 639 CVCXXV*XLGVGGXIIXVXR 698
CV + LGVG + + R
Sbjct: 218 CVHLGL-LLGVGAHMQELHR 236
>11_06_0293 + 22018128-22018556
Length = 142
Score = 98.3 bits (234), Expect = 7e-21
Identities = 49/81 (60%), Positives = 58/81 (71%), Gaps = 1/81 (1%)
Frame = +2
Query: 260 VVSWIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAV- 436
VV+WIKR+L+V KTGHSGTLDPKVTG LIVC+D ATRLVKSQQ AGKEY V H+AV
Sbjct: 59 VVAWIKRLLRVNKTGHSGTLDPKVTGNLIVCVDLATRLVKSQQGAGKEYGCVARFHAAVP 118
Query: 437 ENIQKVTQGLGEAAWSSIPEA 499
+ + +A SS P +
Sbjct: 119 DTARDARSRRSQAPCSSAPRS 139
>05_01_0060 -
418559-418577,418655-418738,418857-418966,419467-419577,
419914-419992,420182-420264,420347-420439,420902-421810
Length = 495
Score = 62.5 bits (145), Expect = 4e-10
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 2/110 (1%)
Frame = +2
Query: 173 NSPLKRPISDYVKSGFINVDKPSNP--SSHEVVSWIKRILKVEKTGHSGTLDPKVTGCLI 346
N+ KR + V +N+ P +S V ++R++ V+K GH+GTLDP TG LI
Sbjct: 291 NARFKRLHQNLVLFMELNICLSCKPGWTSFTVCGKLRRLVNVQKVGHAGTLDPMATGLLI 350
Query: 347 VCIDRATRLVKSQQNAGKEYVAVFNLHSAVENIQKVTQGLGEAAWSSIPE 496
VC+ +AT++V Q K Y VF L A + + W I +
Sbjct: 351 VCVGKATKVVDRYQGMVKGYSGVFRLGEATSTWDADSPVIQREPWEHIKD 400
>09_02_0616 + 11256242-11256430,11256981-11257225,11257317-11257878
Length = 331
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 498 PPLISAVKRQLRVRTVYDSKLLDFDHGQEYWGVLGFSCXGW 620
PP SA R + V ++LLD +H + +LG +C W
Sbjct: 19 PPPASATARASSLPVVDMARLLDPEHREAEVALLGSACRSW 59
>03_02_0655 + 10220328-10220400,10220686-10220737,10220959-10221301
Length = 155
Score = 28.7 bits (61), Expect = 6.4
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Frame = +2
Query: 167 FGNSPLKRPISDYVKSGFI--NVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKVTGC 340
F + P R I D V +G NV NP + W KR L+ +K G + C
Sbjct: 51 FKDYPFTREIWDKVTAGMEQNNVLPVYNPDERLIDWWEKRTLQQDKNQTEGMRSLHMLLC 110
Query: 341 LIVCIDRATRLVKSQQ 388
V +R R+ K ++
Sbjct: 111 WEVWCERNRRIFKGKE 126
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,995,349
Number of Sequences: 37544
Number of extensions: 407136
Number of successful extensions: 1059
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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