Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_I01
         (874 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92803-7|CAB07244.1|  445|Caenorhabditis elegans Hypothetical pr...   210   1e-54
AF025466-5|AAB71031.2|  428|Caenorhabditis elegans Nematode asta...    29   3.3  

>Z92803-7|CAB07244.1|  445|Caenorhabditis elegans Hypothetical
           protein K01G5.5 protein.
          Length = 445

 Score =  210 bits (513), Expect = 1e-54
 Identities = 95/128 (74%), Positives = 107/128 (83%)
 Frame = +2

Query: 83  KLDTAYWPLLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSSHEV 262
           KLD + WPLLLKN+D+LNVRTNHYTP   G SPLKR I +Y+ SGF N+DKPSNPSSHEV
Sbjct: 34  KLDASQWPLLLKNYDKLNVRTNHYTPHVEGVSPLKRDIKNYISSGFFNLDKPSNPSSHEV 93

Query: 263 VSWIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVEN 442
           VSWIKRIL+ EKTGHSGTLDPKV+GCLIVCIDR TRL KSQQ AGKEY+ +F LH  VE+
Sbjct: 94  VSWIKRILRCEKTGHSGTLDPKVSGCLIVCIDRTTRLAKSQQGAGKEYICIFKLHEEVED 153

Query: 443 IQKVTQGL 466
            +KV Q L
Sbjct: 154 DRKVKQAL 161



 Score = 72.1 bits (169), Expect = 5e-13
 Identities = 39/84 (46%), Positives = 52/84 (61%)
 Frame = +3

Query: 447 KKSHRGLEKLRGALFQRPPLISAVKRQLRVRTVYDSKLLDFDHGQEYWGVLGFSCXGWIX 626
           +K  + LEKL GALFQRPPLISAVKRQLR+RTVY++K +++D  Q+  G+    C     
Sbjct: 155 RKVKQALEKLTGALFQRPPLISAVKRQLRIRTVYENKFIEYDPAQQ-MGIFNCICESGTY 213

Query: 627 YSGRCVCXXV*XLGVGGXIIXVXR 698
               CV   +  LG GG +  + R
Sbjct: 214 VRTICVHLGL-ILGCGGQMQELRR 236


>AF025466-5|AAB71031.2|  428|Caenorhabditis elegans Nematode astacin
           protease protein27 protein.
          Length = 428

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -2

Query: 465 SPCVTF*IFSTAECKLKTATYSLPAFCCD 379
           SPC     F+  E KL   T + P FCCD
Sbjct: 360 SPCSMSCSFNALELKLSNFTMTGPRFCCD 388


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,678,325
Number of Sequences: 27780
Number of extensions: 340888
Number of successful extensions: 873
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)