Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_H23
         (846 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical pr...    41   0.001
Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical pr...    41   0.001
AY323527-1|AAP78770.1|  563|Caenorhabditis elegans grainyhead tr...    29   5.5  
AC024797-1|AAF60703.3|  563|Caenorhabditis elegans Grainyhead (d...    29   5.5  
U40959-3|AAA81767.2|  445|Caenorhabditis elegans Hypothetical pr...    28   9.6  

>Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical protein
            F39B1.1 protein.
          Length = 1607

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 1/98 (1%)
 Frame = +3

Query: 498  ISLKDLPS-FDSLDGHTQSQLLHLIEQGAYHRMPTECXXVMWEKRQYXXXXXXXXXXXXX 674
            I ++ +P  F +LD  TQ  LL LIE      + T+   ++W+KR +             
Sbjct: 770  IDMQCIPQDFATLDIETQEYLLELIENQDTSTLETDDQDLIWQKRLHLTNQPEALPLVLS 829

Query: 675  XXTNWYGDHXEXLIXLLRLWEKPSPLNAMXLLLPCFPD 788
               +W       +  +L  W    P  AM  LLP +PD
Sbjct: 830  SLQDWSFGFVMRVYQILEEWAPLRPEIAMEFLLPKYPD 867



 Score = 33.1 bits (72), Expect = 0.26
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +1

Query: 7   IYHGTRPLKTLRFTQASKIECGGFYPRIIFDTWLNLEDLPVNTLPRESRLV 159
           +YHGT+ L          I+   F+PRI  D +   + L +   PRE+R+V
Sbjct: 629 LYHGTQVLDGFSNKVPKTIKNDHFFPRIPLDLYAKFKRLNLCQYPRETRIV 679


>Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical protein
            F39B1.1 protein.
          Length = 1607

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 1/98 (1%)
 Frame = +3

Query: 498  ISLKDLPS-FDSLDGHTQSQLLHLIEQGAYHRMPTECXXVMWEKRQYXXXXXXXXXXXXX 674
            I ++ +P  F +LD  TQ  LL LIE      + T+   ++W+KR +             
Sbjct: 770  IDMQCIPQDFATLDIETQEYLLELIENQDTSTLETDDQDLIWQKRLHLTNQPEALPLVLS 829

Query: 675  XXTNWYGDHXEXLIXLLRLWEKPSPLNAMXLLLPCFPD 788
               +W       +  +L  W    P  AM  LLP +PD
Sbjct: 830  SLQDWSFGFVMRVYQILEEWAPLRPEIAMEFLLPKYPD 867



 Score = 33.1 bits (72), Expect = 0.26
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +1

Query: 7   IYHGTRPLKTLRFTQASKIECGGFYPRIIFDTWLNLEDLPVNTLPRESRLV 159
           +YHGT+ L          I+   F+PRI  D +   + L +   PRE+R+V
Sbjct: 629 LYHGTQVLDGFSNKVPKTIKNDHFFPRIPLDLYAKFKRLNLCQYPRETRIV 679


>AY323527-1|AAP78770.1|  563|Caenorhabditis elegans grainyhead
           transcription factor protein.
          Length = 563

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 501 SLKDLPSFDSLDGHTQSQLLHLIEQGAYHRM 593
           +++DL    +LDG+ Q   L L +   YHRM
Sbjct: 33  NIQDLAKMQTLDGYYQQTSLQLPQSQQYHRM 63


>AC024797-1|AAF60703.3|  563|Caenorhabditis elegans Grainyhead
           (drosophila transcriptionfactor) homolog protein 1
           protein.
          Length = 563

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 501 SLKDLPSFDSLDGHTQSQLLHLIEQGAYHRM 593
           +++DL    +LDG+ Q   L L +   YHRM
Sbjct: 33  NIQDLAKMQTLDGYYQQTSLQLPQSQQYHRM 63


>U40959-3|AAA81767.2|  445|Caenorhabditis elegans Hypothetical
           protein B0310.3 protein.
          Length = 445

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +1

Query: 421 LSILKFLYTHTPGS 462
           ++ILKFLYTHTP S
Sbjct: 10  VNILKFLYTHTPRS 23


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,328,751
Number of Sequences: 27780
Number of extensions: 321183
Number of successful extensions: 806
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)