Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_H22
         (859 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029...    33   0.29 
07_01_0633 - 4735298-4735485,4736083-4736114,4736203-4736297,473...    31   1.2  
07_03_1747 + 29188568-29188715,29188793-29189541                       31   1.6  
12_01_0524 - 4167867-4168445                                           29   6.3  
03_02_0111 + 5688649-5688942                                           28   8.3  
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...    28   8.3  

>05_03_0366 -
           13102147-13102281,13102560-13102739,13102791-13102992,
           13104385-13104575
          Length = 235

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -1

Query: 325 HQPSAAAPLPCVPXQSFVDPIHLKICLYSHGGLGLTNVSMSQM-QGQVDYDFGVGG 161
           H P AAA  P VP +    P  L +   S GG GL   S S +  G  + D G+GG
Sbjct: 7   HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61


>07_01_0633 -
           4735298-4735485,4736083-4736114,4736203-4736297,
           4736414-4736487,4736682-4736817,4736902-4736965,
           4737101-4737166,4737265-4737446,4737824-4737948,
           4738031-4738169,4738250-4738369,4738675-4738746,
           4738900-4738935,4739633-4739749,4739821-4739953,
           4740053-4740156,4740243-4740370,4740880-4741010,
           4741561-4741757,4743906-4744583
          Length = 938

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 19/69 (27%), Positives = 26/69 (37%)
 Frame = -2

Query: 819 GGXXGAGRAXQXRXSXXXGXANGGTGXRPAXXXVAXAAXPXXXXXGAXAXXXLPPSAXVP 640
           GG  G GR    R     G   GG G RPA      A+ P      A +     P+  +P
Sbjct: 73  GGGGGGGRGDGGRGRGRGG--GGGDGVRPAMAAAPAASTPGPVAVAARSTPPPTPAVQIP 130

Query: 639 GSATXTGPE 613
             A+ +  +
Sbjct: 131 AVASSSSAQ 139


>07_03_1747 + 29188568-29188715,29188793-29189541
          Length = 298

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = +3

Query: 378 PPPGTTLSAPVYLITAPSPX*SAWTLALQFLCS*TIGPTTCRLARSSSVLG 530
           PPP TT++  V L TA +   S   +  QF+C+     TTC  + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260


>12_01_0524 - 4167867-4168445
          Length = 192

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 22/72 (30%), Positives = 31/72 (43%)
 Frame = -1

Query: 322 QPSAAAPLPCVPXQSFVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVGGGVPIVR 143
           QPS+AA  P     +    +   +  YSH G    +   S + G  +   G GGG P V 
Sbjct: 104 QPSSAAVAPLPSSTNLKSAVRSAMGSYSHSGTRRVHFGDSTVLG--EKAAGAGGGEPAV- 160

Query: 142 CEERVDHEGQ*C 107
            EE  + E + C
Sbjct: 161 VEEVEEEEEKEC 172


>03_02_0111 + 5688649-5688942
          Length = 97

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +3

Query: 300 SGAAALGWCPRNACGGLTWYC*TRLQPPPGTTLSAPVYLITAPSPX*SAWT 452
           + AAA    P     G  +   +   PPP   L+ P+Y + AP    SA+T
Sbjct: 33  TAAAAAATGPHRRGRGRCYCSASDAPPPPPYVLTTPLYYVNAPPHMGSAYT 83


>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 407 GRGERSPRRWLQPRLAVPRQASTSVPRTP 321
           GRG RS  R L+P LA+   A + +P  P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,072,123
Number of Sequences: 37544
Number of extensions: 454631
Number of successful extensions: 1280
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1278
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)