Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_H21
(891 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 33 0.30
10_08_0217 - 15962192-15962884 31 1.6
06_01_0760 - 5676973-5677830 31 1.6
07_03_1747 + 29188568-29188715,29188793-29189541 30 2.1
06_01_0690 + 5033943-5034740 30 2.1
06_01_0178 + 1386981-1387505 29 3.8
12_01_0524 - 4167867-4168445 29 6.6
10_08_0220 - 15977247-15977804 29 6.6
04_01_0530 - 6928528-6929500,6929514-6930964 28 8.7
03_02_0111 + 5688649-5688942 28 8.7
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 8.7
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 33.1 bits (72), Expect = 0.30
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -3
Query: 316 HQPSAAAPLPCVPXQSFVDPIHLKICLYSHGGLGLTNVSMSQM-QGQVDYDFGVGG 152
H P AAA P VP + P L + S GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>10_08_0217 - 15962192-15962884
Length = 230
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = -1
Query: 888 GRGGXGXXXXWPXXXGGGXGEXXGXXXLXXAGGKGXPGG 772
G GG G W G G G+ G +GG G GG
Sbjct: 40 GGGGSGNGSGWGSGSGSGYGQAGGSGGAYASGGGGGGGG 78
>06_01_0760 - 5676973-5677830
Length = 285
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = -1
Query: 888 GRGGXGXXXXWPXXXGGGXGEXXGXXXLXXAGGKGXPGG 772
G GG G W G G G+ G +GG G GG
Sbjct: 40 GGGGSGNGSGWGSGSGSGYGQSSGSGGAYASGGGGGGGG 78
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +3
Query: 369 PPPGTTLSAPVYLITAPSPX*SAWTLALQFLCS*TIGPTTCXLARSSSV 515
PPP TT++ V L TA + S + QF+C+ TTC + S S+
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESL 258
>06_01_0690 + 5033943-5034740
Length = 265
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/39 (35%), Positives = 15/39 (38%)
Frame = -1
Query: 888 GRGGXGXXXXWPXXXGGGXGEXXGXXXLXXAGGKGXPGG 772
G GG G W G G G+ G GG G GG
Sbjct: 39 GGGGSGNGSGWGSGSGSGYGQASGPGGYASGGGGGGGGG 77
>06_01_0178 + 1386981-1387505
Length = 174
Score = 29.5 bits (63), Expect = 3.8
Identities = 17/39 (43%), Positives = 17/39 (43%)
Frame = -1
Query: 888 GRGGXGXXXXWPXXXGGGXGEXXGXXXLXXAGGKGXPGG 772
GRGG G GGG G G AGGKG GG
Sbjct: 25 GRGGRGGRGGASGGGGGGGGGGGGGGG-GGAGGKGGKGG 62
>12_01_0524 - 4167867-4168445
Length = 192
Score = 28.7 bits (61), Expect = 6.6
Identities = 22/72 (30%), Positives = 31/72 (43%)
Frame = -3
Query: 313 QPSAAAPLPCVPXQSFVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVGGGVPIVR 134
QPS+AA P + + + YSH G + S + G + G GGG P V
Sbjct: 104 QPSSAAVAPLPSSTNLKSAVRSAMGSYSHSGTRRVHFGDSTVLG--EKAAGAGGGEPAV- 160
Query: 133 CEERVDHEGQ*C 98
EE + E + C
Sbjct: 161 VEEVEEEEEKEC 172
>10_08_0220 - 15977247-15977804
Length = 185
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/39 (33%), Positives = 15/39 (38%)
Frame = -1
Query: 888 GRGGXGXXXXWPXXXGGGXGEXXGXXXLXXAGGKGXPGG 772
G GG W G G G+ G GG+G GG
Sbjct: 38 GGGGSDGGSGWGSGSGSGYGQAGGDGSYASGGGEGGGGG 76
>04_01_0530 - 6928528-6929500,6929514-6930964
Length = 807
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +1
Query: 49 VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 189
+SP+LCY+ C RK+ +L+ + SGLPP++ S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515
>03_02_0111 + 5688649-5688942
Length = 97
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +3
Query: 291 SGAAALGWCPRNACGGLTWYC*TRLQPPPGTTLSAPVYLITAPSPX*SAWT 443
+ AAA P G + + PPP L+ P+Y + AP SA+T
Sbjct: 33 TAAAAAATGPHRRGRGRCYCSASDAPPPPPYVLTTPLYYVNAPPHMGSAYT 83
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 398 GRGERSPRRWLQPRLAVPRQASTSVPRTP 312
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,240,293
Number of Sequences: 37544
Number of extensions: 467365
Number of successful extensions: 1836
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1763
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -