Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_H19
(901 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 50 4e-08
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 49 7e-08
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 46 5e-07
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 46 5e-07
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 45 8e-07
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 45 8e-07
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 45 8e-07
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 44 3e-06
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 43 3e-06
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 43 3e-06
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 43 3e-06
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 43 3e-06
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 43 3e-06
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 43 3e-06
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 43 4e-06
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 42 8e-06
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 42 8e-06
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 40 4e-05
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 39 7e-05
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 39 7e-05
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 39 7e-05
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 38 2e-04
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 23 2.9
AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein. 23 2.9
AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine rece... 23 5.0
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 22 6.6
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 49.6 bits (113), Expect = 4e-08
Identities = 36/107 (33%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Frame = +2
Query: 95 IASAAECENATSLSLMIDSLLATYDRESPPDSK----IVVNLTLHLRHA---NIRESEST 253
I SA C + D LL+ Y+R P S +VV L L L N+++ T
Sbjct: 9 ILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILT 68
Query: 254 VRILADLQMNWIDKRLXWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 391
+ L+ W D + W+ E+G T L V SE +W PD+VL N A
Sbjct: 69 TNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVLYNNA 113
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 48.8 bits (111), Expect = 7e-08
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 7/137 (5%)
Frame = +2
Query: 119 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLHLRHAN-IRESESTVRILADLQMNW 286
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 287 IDKRLXWNAGEWGCSTWLVSSERLWRPDVVLLN---AAVTTAGDYALRARVSNNGSVSXI 457
+D+RL + G+ + + R+W+PD N + + T R+ +G V
Sbjct: 62 VDRRLAFQGGKETLALSISMLARIWKPDTYFYNGKHSYLHTITSPNKFVRLYQDGRVLYS 121
Query: 458 KRLDISTPISMQLDNWP 508
RL I M L+N+P
Sbjct: 122 SRLTIKAGCPMNLENFP 138
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 46.0 bits (104), Expect = 5e-07
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 7/109 (6%)
Frame = +2
Query: 140 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLX 304
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 305 WNAGEW-GCSTWLVSSERLWRPDVVLLNAA-VTTAGDYALRARVSNNGS 445
WN E+ G ++ +LW+PD+++ N+A G Y V++NGS
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGS 166
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 46.0 bits (104), Expect = 5e-07
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 7/109 (6%)
Frame = +2
Query: 140 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLX 304
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 305 WNAGEW-GCSTWLVSSERLWRPDVVLLNAA-VTTAGDYALRARVSNNGS 445
WN E+ G ++ +LW+PD+++ N+A G Y V++NGS
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGS 166
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 45.2 bits (102), Expect = 8e-07
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +2
Query: 230 NIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-VTTA 403
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 404 GDYALRARVSNNGS 445
G Y V++NGS
Sbjct: 85 GTYQTSVVVTHNGS 98
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 45.2 bits (102), Expect = 8e-07
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Frame = +2
Query: 113 CENATSLSLMIDS---LLATYDRESPPDSKIV--VNLTLHLRHANIRESESTVRILADLQ 277
C++ TS S + L YDR+ P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 278 MNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVLLNAAVTTAG 406
+ W L W + E+ ++ V S +W PD+V+ +VT+ G
Sbjct: 88 LMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIVM--HSVTSVG 129
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 45.2 bits (102), Expect = 8e-07
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 8/110 (7%)
Frame = +2
Query: 86 TCAIASAAECENATSLSLMIDSLLATYDRESPP----DSKIVVNLTLHLRH---ANIRES 244
+C +A + + D LL+ Y+R P ++ V + L L N++
Sbjct: 6 SCLVAPFPGASANSEAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQ 65
Query: 245 ESTVRILADLQMNWIDKRLXWNAGEWG-CSTWLVSSERLWRPDVVLLNAA 391
T + ++ W D +L WN ++G T V SE +W PD+VL N A
Sbjct: 66 IMTTNVW--VEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNA 113
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 43.6 bits (98), Expect = 3e-06
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Frame = +2
Query: 113 CENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLR-------HANIRESESTVRILAD 271
C + D LL+ Y++ P + LT+ ++ N++ T +
Sbjct: 19 CSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLW-- 76
Query: 272 LQMNWIDKRLXWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 391
++ +W D +L W+ E+G L V S+ +WRPD+VL N A
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYNNA 117
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 43.2 bits (97), Expect = 3e-06
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +2
Query: 230 NIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-VTTA 403
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 404 GDYALRARVSNNGS 445
G Y V+++GS
Sbjct: 85 GTYQTSVVVTHDGS 98
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 43.2 bits (97), Expect = 3e-06
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +2
Query: 230 NIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-VTTA 403
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 404 GDYALRARVSNNGS 445
G Y V+++GS
Sbjct: 85 GTYQTSVVVTHDGS 98
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 43.2 bits (97), Expect = 3e-06
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +2
Query: 230 NIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-VTTA 403
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 404 GDYALRARVSNNGS 445
G Y V+++GS
Sbjct: 85 GTYQTSVVVTHDGS 98
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 43.2 bits (97), Expect = 3e-06
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +2
Query: 230 NIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-VTTA 403
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 404 GDYALRARVSNNGS 445
G Y V+++GS
Sbjct: 85 GTYQTSVVVTHDGS 98
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 43.2 bits (97), Expect = 3e-06
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +2
Query: 230 NIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-VTTA 403
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 404 GDYALRARVSNNGS 445
G Y V+++GS
Sbjct: 85 GTYQTSVVVTHDGS 98
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 43.2 bits (97), Expect = 3e-06
Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 7/125 (5%)
Frame = +2
Query: 92 AIASAAECENATSLSLMIDSLLATYD-RESPPDSK---IVVNLTLHLRHA-NIRESESTV 256
A+A++ + +++ LL TY+ E P ++ +V++ L L ++ E +
Sbjct: 11 ALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDVDEKNQLL 70
Query: 257 RILADLQMNWIDKRLXWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-VTTAGDYALRARV 430
L++ W D + WN ++G L + RLW+PDV++ N+A G Y V
Sbjct: 71 ITNLWLKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYNSADEGFDGTYPTNVVV 130
Query: 431 SNNGS 445
NNG+
Sbjct: 131 KNNGT 135
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 42.7 bits (96), Expect = 4e-06
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Frame = +2
Query: 140 MIDSLLATYDRESPPDSKIVVNLT--LHLRHANIRESESTVRILAD---LQMNWIDKRLX 304
+ D LL+ Y+R P LT L L+ + + E +++ ++ W D +L
Sbjct: 37 LYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVWVEQRWNDYKLK 96
Query: 305 WNAGEWGCSTWL-VSSERLWRPDVVLLNAA 391
WN E+G L V SE +W PD+VL N A
Sbjct: 97 WNPEEYGGVEMLYVPSENIWLPDIVLYNNA 126
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 41.9 bits (94), Expect = 8e-06
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Frame = +2
Query: 140 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLX 304
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 305 WNAGEWGCSTWL-VSSERLWRPDVVLLNAA 391
W E+G L V S+ +WRPD+VL N A
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYNNA 121
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 41.9 bits (94), Expect = 8e-06
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Frame = +2
Query: 140 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLX 304
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 305 WNAGEWGCSTWL-VSSERLWRPDVVLLNAA 391
W E+G L V S+ +WRPD+VL N A
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYNNA 121
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 39.5 bits (88), Expect = 4e-05
Identities = 32/135 (23%), Positives = 58/135 (42%), Gaps = 8/135 (5%)
Frame = +2
Query: 128 SLSLMIDSLLATYDRESPPD----SKIVVNLTLHLRHAN-IRESESTVRILADLQMNWID 292
++++++++LL Y+ P + VV + +R + E + + + +W D
Sbjct: 36 NITMVLENLLMNYENNQLPTHGKGTPTVVKTNILIRSMGPVSELDMDYSMDCYFRQSWRD 95
Query: 293 KRLXWNAGEWGCSTWLVSSERLWRPDVVLLN---AAVTTAGDYALRARVSNNGSVSXIKR 463
RL + S + ER+WRPD N + V T R+S +G + R
Sbjct: 96 SRLSFLGPIKSLSLSIKMLERIWRPDTYFYNGKHSYVHTITVPNKLLRISQDGDILYSMR 155
Query: 464 LDISTPISMQLDNWP 508
L I M+L N+P
Sbjct: 156 LTIKAKCPMELRNFP 170
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 38.7 bits (86), Expect = 7e-05
Identities = 39/160 (24%), Positives = 69/160 (43%), Gaps = 15/160 (9%)
Frame = +2
Query: 119 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 286
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFW 67
Query: 287 IDKRLXWNAGEWGCSTWLVSSE---RLWRPDVVLLNA------AVTTAGDYALRARVSNN 439
D RL + G T V SE +W PD +N TT+ ++ R+ ++
Sbjct: 68 TDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEF---IRIHHS 123
Query: 440 GSVSXIKRLDISTPISMQLDNWPNXH--AHFARSXFGXRM 553
GS++ RL I+ M L +P H FG M
Sbjct: 124 GSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTM 163
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 38.7 bits (86), Expect = 7e-05
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Frame = +2
Query: 191 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLXWNAGEWG-CSTWLVSSERLWR 364
K+ VN L ++ N+ E ++ L+ W D +L W+ ++G + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 365 PDVVLLNAAVTTAGDYALR 421
PD+VL N A G+Y +R
Sbjct: 111 PDIVLFNNA---DGNYEVR 126
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 38.7 bits (86), Expect = 7e-05
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +2
Query: 194 IVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVSSERLWRPD 370
+V L+LH ++ E + + W D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 371 VVLLNAA 391
+L N A
Sbjct: 92 TILYNNA 98
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 37.5 bits (83), Expect = 2e-04
Identities = 39/160 (24%), Positives = 68/160 (42%), Gaps = 15/160 (9%)
Frame = +2
Query: 119 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 286
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDFTLDFYFRQFW 67
Query: 287 IDKRLXWNAGEWGCSTWLVSSE---RLWRPDVVLLNA------AVTTAGDYALRARVSNN 439
D RL + G T V SE +W PD +N TT+ ++ R+ ++
Sbjct: 68 TDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEF---IRIHHS 123
Query: 440 GSVSXIKRLDISTPISMQLDNWPNXH--AHFARSXFGXRM 553
GS++ RL I+ M L +P H FG M
Sbjct: 124 GSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTM 163
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 23.4 bits (48), Expect = 2.9
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -2
Query: 543 PKXERAKCACXLGQLSNCIEIGVLMSKRFXQETEPLLDTRARR 415
P R CA QL+N E + +K +E LLD +R
Sbjct: 418 PDIFRVSCATEHSQLTNISEEVLKEAKIIQEEIRTLLDESIQR 460
>AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein.
Length = 238
Score = 23.4 bits (48), Expect = 2.9
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -2
Query: 543 PKXERAKCACXLGQLSNCIEIGVLMSKRFXQETEPLLDTRARR 415
P R CA QL+N E + +K +E LLD +R
Sbjct: 124 PDIFRVSCATEHSQLTNISEEVLKEAKIIQEEIRTLLDESIQR 166
>AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine
receptor protein.
Length = 694
Score = 22.6 bits (46), Expect = 5.0
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = -2
Query: 444 EPLLDTRARRA*SPAVVTAAFSSTTS 367
EP+++T + + +P + +A SST+S
Sbjct: 502 EPVVETNSSPSPNPRIASAPSSSTSS 527
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 22.2 bits (45), Expect = 6.6
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2
Query: 350 ERLWRPDVVLLNAAVT 397
+ LW+PD LNA V+
Sbjct: 69 DSLWQPDPYFLNAKVS 84
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,191
Number of Sequences: 438
Number of extensions: 3687
Number of successful extensions: 51
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -