Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_H18
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo...    27   3.4  
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    26   5.9  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    26   5.9  
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom...    26   7.8  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    26   7.8  

>SPBC2A9.06c |||di-trans,
           poly-cis-decaprenylcistransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = +1

Query: 4   WIRWTCACLVHLLY--PCLRCVIQR 72
           W+ WTC+ L++ LY   C R +I+R
Sbjct: 27  WVFWTCSYLLNFLYHHHCSRDLIRR 51


>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
 Frame = +2

Query: 179 FNKIMSTLKLTSXVGSGLYSHWRDVFEHVRSTAKKKHYAXXNTXSGTPQERECXIRK-SC 355
           F+K++ST+   S   + L   WRD  +HV    +          S       C       
Sbjct: 384 FSKMLSTI---SNEITNLQGDWRDQLDHVEFLQEHLGPLEVELASVKVLYDNCFQAGIEE 440

Query: 356 NNVSVTSMEDLXHEEIVTSYVLAHVAQF 439
           N+ ++ S EDL HE  +T+ ++A+  ++
Sbjct: 441 NDYTMFSYEDLEHEFGITANIIANKIKY 468


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +2

Query: 356 NNVSVTSMEDLXHEEIVTSYVLAHVAQFDCRRHHMAFTNGNT 481
           +N+SVT+   L +  +V++Y L       CR    AFTNG T
Sbjct: 853 SNISVTNENRLQYIHLVSNYYLNARLSRQCR----AFTNGFT 890


>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 245 RDVFEHVRSTAKKKHYAXXNTXSGTPQERECXI 343
           R+VFE     A  KH       SGT +++ C +
Sbjct: 169 REVFESATRAAMLKHKPKVKPSSGTKKKKRCIL 201


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -2

Query: 690 NRVDCKISXTIHSXMSWFTVLVPYNXSSSHWLKNESCRN 574
           N + CK++    S +   T ++ ++ +SSHW    S  N
Sbjct: 417 NTMLCKLTEDTSSFLKRQTEMLSHSPASSHWASFSSLEN 455


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,985,237
Number of Sequences: 5004
Number of extensions: 52921
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)