Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_H17
(847 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 30 0.47
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos... 27 3.3
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 27 4.4
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|... 26 5.8
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.8
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy... 26 5.8
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ... 26 5.8
SPBC2D10.08c |||mitochondrial ribosomal protein subunit Yml6|Sch... 26 5.8
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom... 26 7.7
SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces po... 26 7.7
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 26 7.7
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 29.9 bits (64), Expect = 0.47
Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 3/156 (1%)
Frame = -2
Query: 462 TPSIMLSLMLSP*VKRRTLITTCTMMITSKKIAYVTTMQ*LSRIAPQHPKNAITNITAPT 283
+PS+ LS + + + T++ S K T A P+N T IT+PT
Sbjct: 320 SPSVALSTSSTTTITNASTPAANTIISRSSKPTDTTNS---ISFANTTPENTSTQITSPT 376
Query: 282 TMKIHGP-TARWVFSKS--LTMVQFIRNXTPIPTSSRPRSATTRLKKNSTYFTKLVPHPM 112
+ P T+ V + S +T + TPI TSS +++T + +S + P+
Sbjct: 377 AVNSSTPITSSSVLNSSTPITSSSILNTSTPI-TSSSVLNSSTPITSSSILNSST---PI 432
Query: 111 LRALFFISVSXINTSLAVRSGHVGTAFSVHGVNTTL 4
+ S + I +S A+ + T+ SV +T +
Sbjct: 433 TSSTVLNSSTPITSSTALNTSTPITSSSVLNSSTPI 468
>SPBP35G2.05c |cki2||serine/threonine protein kinase
Cki2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 435
Score = 27.1 bits (57), Expect = 3.3
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Frame = -2
Query: 408 LITTCTMMITSKKIAYVTTMQ*LSRIAPQHPKNAITNITAPTTMKIHGPTAR---WVFSK 238
L C + K +A +T Q LSR+ H KN + P I P++R V+
Sbjct: 95 LFEWCGRRFSVKTVA-MTAKQMLSRVQTIHEKNLVYRDIKPDNFLIGRPSSRNANMVYMV 153
Query: 237 SLTMVQFIRNXTP---IPTSSRPR-SATTRLKKNSTY 139
M ++ R+ IP S R S T R +T+
Sbjct: 154 DFGMAKYYRDPKTKQHIPYSERKSLSGTARYMSINTH 190
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 26.6 bits (56), Expect = 4.4
Identities = 18/82 (21%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = -1
Query: 496 VSVGSLFE*HADAIHNAXLDALAVGEEEDADHHLHNDD-HQQEDCVRDDHAVTLAYRSTA 320
+SV + E DA+ A + +V +E++ + L DD + +ED + D+ + +
Sbjct: 26 LSVSTKEELGDDAL--AAEEGQSVLDEQEIEEALEEDDTNYEEDIIDDEESAQVDEEELE 83
Query: 319 SQERDHEHYSPDDYEDPRTDSK 254
+E + E +P+ + +S+
Sbjct: 84 EEEEEEEDATPEPVVTSKKNSR 105
>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1018
Score = 26.2 bits (55), Expect = 5.8
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +2
Query: 446 SIMDGVGVLFKKRSDANAXEAAEAVFSELQRQF--ECCGNTDAIN 574
SI+ + V FK+R+D N E F EL +Q C N +++N
Sbjct: 589 SIVQSLSVAFKERNDRNEQE-IPFFFEELLKQLFTLCFANCESMN 632
>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +2
Query: 545 ECCGNTDAINYGQFTLPESCCVKKSILSTFAGNNCTV 655
+C G+ YGQ C S++S AG N T+
Sbjct: 302 DCSGHGRCSKYGQLDSCYVCQCSNSVVSNAAGQNKTI 338
>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 286
Score = 26.2 bits (55), Expect = 5.8
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = -1
Query: 424 GEEEDADHHLHNDDHQQEDCVRDDH 350
G ++ HH H+ DH D DH
Sbjct: 10 GSDDSTHHHTHDYDHHNHDHHGHDH 34
>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 429
Score = 26.2 bits (55), Expect = 5.8
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 274 LHSRRGCNVRDRVLGMLWSDTRESLHGRHVRNLLAGDHH 390
L SRR N + +V WS+ E +H + RNL + H
Sbjct: 12 LFSRRFPNWKRKVQTDSWSNVPEHIHSKIGRNLFQKEGH 50
>SPBC2D10.08c |||mitochondrial ribosomal protein subunit
Yml6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 261
Score = 26.2 bits (55), Expect = 5.8
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -2
Query: 237 SLTMVQFIRNXTPIPTSSRPRSATTRLKKNSTYFTKLVPHPML 109
SL + +F + T + +P S T + NS+ FTK P P L
Sbjct: 218 SLIVEKFAQRNT-LSDMDQPASLTAYVDANSSSFTKSKPEPSL 259
>SPAC6F12.13c |fps1||geranyltranstransferase
Fps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 25.8 bits (54), Expect = 7.7
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = +2
Query: 482 RSDANAXEAAEAVFSEL--QRQFECCGNTDAINYGQFT--LPESCCVKKSILSTFAG 640
R D+ + + +AVF EL + +FE ++ + + ES +KKSI +TF G
Sbjct: 284 RKDSESEKRVKAVFEELNIRGEFENYEESEVSEIKKLIDGVDESTGLKKSIFTTFLG 340
>SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 361
Score = 25.8 bits (54), Expect = 7.7
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -2
Query: 336 RIAPQHPKNAITNITAPTTMKIHG 265
RI P P N + NIT P+T+ HG
Sbjct: 175 RIFP--PTNLVANITLPSTLHPHG 196
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 25.8 bits (54), Expect = 7.7
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = -1
Query: 415 EDADHHLHNDDHQQEDCVRDDHAVTLAYRSTASQERDHEHYSPDDY 278
E+ + N + Q+ DDH + SQE HEH D+
Sbjct: 505 EEFEEEKDNVEAQKMGYTNDDHVSQHEHTHENSQEHHHEHNHNHDH 550
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,698,060
Number of Sequences: 5004
Number of extensions: 49097
Number of successful extensions: 175
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -