Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_H17
         (847 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0129 - 12590983-12591315,12591432-12591705,12591816-12593800     34   0.16 
02_02_0310 - 8842286-8843314                                           32   0.66 
08_02_0707 - 20212190-20214592                                         31   1.2  
10_06_0171 + 11466934-11466990,11467073-11468312,11468450-114685...    30   2.0  
06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600...    30   2.0  
12_02_1155 + 26541137-26541142,26541244-26542623,26542730-265428...    29   6.2  
03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,970...    28   8.1  

>09_03_0129 - 12590983-12591315,12591432-12591705,12591816-12593800
          Length = 863

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = +2

Query: 563 DAINYGQFTLPESCCVKKSILSTFAGNNCTVDAA 664
           D  N      P SCCV+K I+S F   NCT D A
Sbjct: 43  DTSNADDSVGPASCCVRKIIVSNFLPLNCTKDEA 76


>02_02_0310 - 8842286-8843314
          Length = 342

 Score = 31.9 bits (69), Expect = 0.66
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -1

Query: 403 HHLHNDDHQQEDCVRDDHAVTLAYRSTA-SQERDHEHYSPDDYEDPRTDSKM 251
           HH H+D++++++  + D A     R  +  + R H H+  DD+E     + M
Sbjct: 194 HHHHHDENEEDEHEQADEASPAVERLISFHRRRHHHHHHEDDHEQREEGAPM 245


>08_02_0707 - 20212190-20214592
          Length = 800

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 35/168 (20%), Positives = 65/168 (38%), Gaps = 23/168 (13%)
 Frame = -1

Query: 583 LAVVDSVSVTAAFELSLQFREDSLGGLVCVSVGSL----------FE*HADAIHNAXLDA 434
           L +V ++ V  +FE  L+ RE S   L+ VS+G L           E H  A   +   +
Sbjct: 440 LVLVGALIVLESFERILEPREISTSSLLTVSIGGLVVNVIGLVFFHEEHHHAHGGSCSHS 499

Query: 433 LAVGEEEDADH-HLHNDDHQQEDCVRDDHAV--------TLAYRSTASQERDHEHY---- 293
            +        H H H+  H  ED    DHA+           +   A++   H+H+    
Sbjct: 500 HSHSHSHSHSHSHSHSHVHGHEDHHNHDHALQGVNHNGACCEHHGDANKSHHHDHHHDSS 559

Query: 292 SPDDYEDPRTDSKMGLQ*VFDHGPVHQERYSNPH*QQAEERDDQVEEE 149
           + + + +  T++         HG  H   + + H +  ++  D   ++
Sbjct: 560 NEESHHNSLTENSCKENHSHCHGHDHHHHHHHDHSEHHQQSGDHAHQD 607


>10_06_0171 +
           11466934-11466990,11467073-11468312,11468450-11468596,
           11469650-11470140
          Length = 644

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 439 DALAVGEEEDADHHLHNDDHQQEDCVRDDHAV 344
           D   + EE+D DHH H+  H   D    +HA+
Sbjct: 320 DTFRIAEEDDDDHHHHHHYHGDADDDDGEHAM 351


>06_03_1283 - 28957729-28959258,28959354-28959550,28959824-28960026,
            28960097-28960424,28960524-28960661,28960765-28961020,
            28961529-28961626,28963104-28963367,28964395-28964584
          Length = 1067

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 454  HNAXLDALAVGEEEDADHHLHNDDHQQEDC 365
            H     ++++ E  D   H HN++H+ EDC
Sbjct: 963  HPVQEHSISIEESSDHHEHHHNEEHKAEDC 992


>12_02_1155 +
           26541137-26541142,26541244-26542623,26542730-26542852,
           26542996-26543168,26543332-26543572,26543931-26544023,
           26544092-26544232,26544358-26544450,26544633-26544837,
           26544993-26545078,26545532-26545620,26545736-26545820,
           26545898-26545954,26546319-26546399,26547130-26547321
          Length = 1014

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 331 DTRESLHGRHVRNLLAGDHHCASGDQRPPLHLRREHQ 441
           ++ + L G  V N+L GDH  A  +QR     +R+ Q
Sbjct: 763 NSTDDLSGPDVSNVLVGDHQPADAEQRAQKREQRQKQ 799


>03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,
            9700145-9700235,9700698-9700759,9701256-9702962,
            9703789-9703870,9703972-9704057,9704855-9704968,
            9705113-9705163,9705261-9705358,9707084-9707546
          Length = 1367

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = -1

Query: 439  DALAVGEEEDADHHLHNDDHQQEDCVRDDHAVTLAYRSTASQERDHEHYSPDD 281
            DA   G  E+A  H     H    C RDD  V +     +S+ +D++    DD
Sbjct: 1209 DAKNCGSGEEAGDHDSERTHGTLPCSRDDEPVHVPSDFGSSKSQDNQRDEDDD 1261


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,855,835
Number of Sequences: 37544
Number of extensions: 373392
Number of successful extensions: 1398
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1391
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)