Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_H16
(798 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 256 2e-69
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 254 8e-69
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 44 3e-05
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 29 1.0
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 28 1.8
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 27 3.1
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 9.5
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 25 9.5
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 256 bits (628), Expect = 2e-69
Identities = 122/185 (65%), Positives = 145/185 (78%)
Frame = +1
Query: 82 VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVTNLRRTWEKLVLAARAVV 261
VL ++D+ +LAA +H+G++N+ +ME YV+KRR+DG H+ NL +TWEKLVLAAR +
Sbjct: 10 VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69
Query: 262 XIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLD 441
IENPADV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+IV D
Sbjct: 70 TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTD 129
Query: 442 PAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLR 621
P D Q I EAS+VNIPVIALC+TDS L VD+AIP N K SIGL W+LLAREVLRLR
Sbjct: 130 PRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLR 189
Query: 622 GVLPR 636
G + R
Sbjct: 190 GNISR 194
Score = 34.7 bits (76), Expect = 0.016
Identities = 12/22 (54%), Positives = 18/22 (81%)
Frame = +2
Query: 647 WDVVVDLFFYRXPEXSEKDEQQ 712
W+V+ DL+FYR PE E++E+Q
Sbjct: 198 WEVMPDLYFYRDPEEIEREEEQ 219
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 254 bits (623), Expect = 8e-69
Identities = 119/189 (62%), Positives = 147/189 (77%)
Frame = +1
Query: 70 GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVTNLRRTWEKLVLAA 249
G ++L +ED+ ++LAA H+G++N+ +M+ YV+KRR+DG H+ NL +TWEKLVLAA
Sbjct: 5 GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64
Query: 250 RAVVXIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLL 429
R + IENPADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+
Sbjct: 65 RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLI 124
Query: 430 IVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREV 609
+V DP D Q I EAS+VNIPVIALC+TDS L VDIAIP N K SIGL+W+LLAREV
Sbjct: 125 VVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREV 184
Query: 610 LRLRGVLPR 636
LR+RG L R
Sbjct: 185 LRVRGTLSR 193
Score = 36.3 bits (80), Expect = 0.005
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +2
Query: 647 WDVVVDLFFYRXPEXSEKDEQQAKEQA 727
WDV+ DL+FYR PE E++E+ K A
Sbjct: 197 WDVMPDLYFYRDPEEVEREEEAKKAAA 223
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 43.6 bits (98), Expect = 3e-05
Identities = 46/190 (24%), Positives = 80/190 (42%), Gaps = 27/190 (14%)
Frame = +1
Query: 115 MLAATTHLGAENV--NFQMETYVYKRRADGTHVTNLRRTWEKLVLAARAVVXIENPADVF 288
+L++ HLG N + ++Y +R +G H+ +L +T L A V I +
Sbjct: 53 LLSSGAHLGHSTSIWNPYTQPFIYGKR-EGIHIISLDQTMVYLRRAISVVRSIAKENGII 111
Query: 289 VISSRPFGQR-AVLKFAAHTGATPIAGRFTPGAFTN--QIQA------------------ 405
+ GQ+ +V+ A I R+ PG TN ++Q
Sbjct: 112 LFIGTRNGQKDSVVAAAKRARGYHIFDRWLPGLLTNAREVQGKLGGSILCKDNRGKLIQT 171
Query: 406 ----AFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHS 573
++ P L+++L+P ++ EA ++P I + +TD+ R V IP N S
Sbjct: 172 DKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRC 231
Query: 574 IGLMWWLLAR 603
L+ LL+R
Sbjct: 232 TDLIAGLLSR 241
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.7 bits (61), Expect = 1.0
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Frame = +1
Query: 340 HTGATPIAGRFTPGAFTNQIQAAFR--EPRLLIVLDPAQDHQPI---TEASYVNIPVIAL 504
+ A P G T+ I A F+ +P + ++ D + T A + + L
Sbjct: 29 YVNAAPHLGHLYSLVLTDAI-ARFQNLKPDVSVISSTGTDEHGLKVQTVAQTEGVSPLQL 87
Query: 505 CNTDSPLRFVDIAIPCNTKSSHSI 576
C+ +S RF D+A+ NTK +H I
Sbjct: 88 CDRNSK-RFADLAVAANTKFTHFI 110
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/59 (23%), Positives = 28/59 (47%)
Frame = +1
Query: 205 VTNLRRTWEKLVLAARAVVXIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPG 381
V ++R TW +LV+ + + + N ++ +I++ + V+ FA H PG
Sbjct: 89 VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVHENYVAYNSPTNPG 147
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 27.1 bits (57), Expect = 3.1
Identities = 22/69 (31%), Positives = 31/69 (44%)
Frame = -1
Query: 468 SNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRRSTGVRGKLQYSTLTEGP**DD 289
S GL L R + E F + +S + W T + + G+RG ++ EGP D
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP-SAD 225
Query: 288 EHISGVLDG 262
H SGV G
Sbjct: 226 LH-SGVFGG 233
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -2
Query: 659 PQHPSAGQRGSTPRSLSTSRANNHHI--KPIEWEDLVLHGIAMSTNL 525
PQHPSA S P S ++ + +P++ + ++ IA +TNL
Sbjct: 1537 PQHPSAAALSSAPADNSMPHRSSPYAPQEPVQ-KPQAINNIAPATNL 1582
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = -1
Query: 672 KNKSTTTSQRWSAGKHTTKPQHFTCQQPPHQTNRVGRLGVAWDSNVHKS 526
+++S+ +R S GK+ P H P Q N G G + + + S
Sbjct: 78 RSRSSNNKRRTSFGKNGASPTH---SASPRQGNNTGANGALFSQSTNSS 123
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,465,762
Number of Sequences: 5004
Number of extensions: 76705
Number of successful extensions: 179
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -