Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_H16
(798 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 251 4e-67
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 248 4e-66
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119... 32 0.46
10_08_0428 + 17842370-17842633,17842835-17842971,17843609-17844314 31 1.1
03_05_0954 - 29113938-29114024,29114277-29114444,29115156-291152... 29 4.3
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 5.7
10_02_0114 + 5431578-5431724,5432753-5432797,5433572-5433691,543... 29 5.7
09_06_0103 + 20873310-20873382,20873530-20873735 29 5.7
10_08_1056 - 22591847-22591936,22592968-22593052,22593135-22593430 28 7.5
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561... 28 7.5
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 28 7.5
12_02_0979 - 25009721-25009975,25010058-25010127,25010216-250103... 28 9.9
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 251 bits (615), Expect = 4e-67
Identities = 118/195 (60%), Positives = 147/195 (75%), Gaps = 1/195 (0%)
Frame = +1
Query: 52 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVTNLRRTWE 231
++A G L+ E+DV MLAA HLG +N +FQME YVYKRR+DG ++ NL +TWE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 232 KLVLAARAVVXIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAF 411
KL LAAR +V IENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120
Query: 412 REPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 591
EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K +SIG ++W
Sbjct: 121 SEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFW 180
Query: 592 LLAREVLRLRG-VLP 633
LLAR VL++RG +LP
Sbjct: 181 LLARMVLQMRGTILP 195
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/27 (55%), Positives = 22/27 (81%)
Frame = +2
Query: 644 RWDVVVDLFFYRXPEXSEKDEQQAKEQ 724
+WDV+VDLFFYR PE +++ E++A Q
Sbjct: 198 KWDVMVDLFFYRDPEEAKEQEEEAPAQ 224
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 248 bits (607), Expect = 4e-66
Identities = 115/184 (62%), Positives = 141/184 (76%), Gaps = 1/184 (0%)
Frame = +1
Query: 85 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVTNLRRTWEKLVLAARAVVX 264
L+ E+D+ MLAA HLG +N +FQME YVYKRR DG ++ NL +TWEKL LAAR +V
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 265 IENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 444
IENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDP 131
Query: 445 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRG 624
DHQPI E++ NIP IA C+TDSP+R+VDI IP N K SIG ++WLLAR VL++RG
Sbjct: 132 RTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRG 191
Query: 625 -VLP 633
+LP
Sbjct: 192 TILP 195
Score = 39.5 bits (88), Expect = 0.003
Identities = 18/30 (60%), Positives = 23/30 (76%)
Frame = +2
Query: 644 RWDVVVDLFFYRXPEXSEKDEQQAKEQAVV 733
+WDV+VDLFFYR PE E EQ+ +E A+V
Sbjct: 198 KWDVMVDLFFYRDPE--EAKEQEEEEAALV 225
>08_01_0152 -
1190358-1190462,1190648-1190765,1191134-1192691,
1193338-1193530
Length = 657
Score = 32.3 bits (70), Expect = 0.46
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -3
Query: 334 QTSVQHADRRAVMR*RTHQRGSRWXRQHEQPEQVFPRYDASWSHGYHQHVVC 179
+ SV + D+ ++ RT RGS QPE + PRY+ W H VC
Sbjct: 269 KNSVNNDDKPMLVSIRTKGRGSSTLPSIAQPEPL-PRYNKHWRRKAHSMCVC 319
>10_08_0428 + 17842370-17842633,17842835-17842971,17843609-17844314
Length = 368
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -1
Query: 669 NKSTTTSQRWSAGKHTTKPQHFTCQQPPHQTNRVGRLGVAW 547
N S+T+S WS K T KP FT P + + + AW
Sbjct: 321 NSSSTSSSIWSTSKWTLKPDAFTLPLPLPLFDNIPKPIAAW 361
>03_05_0954 -
29113938-29114024,29114277-29114444,29115156-29115212,
29115314-29115369,29115463-29115572,29116142-29116310,
29116418-29116742,29117378-29117442,29117541-29117712,
29118191-29118484
Length = 500
Score = 29.1 bits (62), Expect = 4.3
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = -2
Query: 386 KAPGVKRPAIGVAPVCAANFSTAR*PKGRDEMTNTSAGFSMXTTARAARTSFSQVRRKLV 207
KAPG K P P A F+T + PK SA F ++ +A T +V +
Sbjct: 237 KAPGAKAPPPPALP-SAPLFTTEKSPKSAQPKEGMSAVFQEISSGKAVTTGLRKVTDDMK 295
Query: 206 T 204
T
Sbjct: 296 T 296
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 152 TFSAPRWVVAASILVTSSSLRASTSNP 72
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>10_02_0114 +
5431578-5431724,5432753-5432797,5433572-5433691,
5433773-5433880,5434900-5435073,5435366-5435503,
5435879-5435986,5436131-5436238,5436340-5436488,
5437594-5437747,5437980-5438140,5438221-5438427,
5438575-5438758,5438846-5438929,5439023-5439222,
5439314-5439373,5439461-5439665
Length = 783
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -2
Query: 722 VPWLVV-HPFHFXQXHGRRTNQPQHPSAGQRGSTPRSLSTSRANNHHIKPIEWEDLVLH 549
VPW+++ PF + H +R Q+ + L + + HH + E+ ++ +H
Sbjct: 612 VPWMLIPKPFFLKKQHEQRHQGQQYTMLQATDESVTELEEHQDDPHHHEEFEFSEVFVH 670
>09_06_0103 + 20873310-20873382,20873530-20873735
Length = 92
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +3
Query: 330 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 437
+CR+ RC YC G RC + DPS ++ +C+
Sbjct: 45 LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83
>10_08_1056 - 22591847-22591936,22592968-22593052,22593135-22593430
Length = 156
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 671 RTNQPQHPSAGQRGSTPRSLSTSRANNHHIKP 576
+T Q +H +A R PR+ +TS+ + IKP
Sbjct: 66 QTQQVRHFAAKDRSRAPRTPTTSKVKKYKIKP 97
>01_06_0902 +
32853708-32853739,32854787-32855596,32856094-32856157,
32856375-32856446
Length = 325
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +3
Query: 159 PDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRXH 266
P +C+ T C C K CS CSC + H
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 28.3 bits (60), Expect = 7.5
Identities = 22/78 (28%), Positives = 27/78 (34%)
Frame = +3
Query: 105 CHQNACCNHPSWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRXHREPR*C 284
CH C P GR+ P G + CD A+ G TC C H+ P C
Sbjct: 324 CHAGKCGGCPLQGRRT-CPCGKKDYPSL----DCDAEAATCGSTCEKVLGCGRHKCPERC 378
Query: 285 VRHLITALRSACCTEVCR 338
R T+ CR
Sbjct: 379 HRGSCVETCRLVITKSCR 396
>12_02_0979 -
25009721-25009975,25010058-25010127,25010216-25010381,
25010501-25010651,25010843-25010890,25011172-25011225,
25011400-25011513,25012666-25012782,25012899-25012991,
25013085-25013123,25013990-25014055
Length = 390
Score = 27.9 bits (59), Expect = 9.9
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +1
Query: 199 THVTNLRRTWEKLVLAARAVVXIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTP 378
TH+++ R W L+ A +V + +P D+F +SSR + R V + A F
Sbjct: 96 THLSH-REIWRVLLYAILLIVLL-SPFDMFYLSSRFYFLRTVWRIMLPLQAITFPDFFLA 153
Query: 379 GAFTN 393
FT+
Sbjct: 154 DIFTS 158
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,364,164
Number of Sequences: 37544
Number of extensions: 584635
Number of successful extensions: 1559
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1559
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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