Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_H14
         (864 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...   141   6e-34
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327...   140   2e-33
01_05_0125 - 18382402-18382761,18382863-18383036                       28   8.4  

>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score =  141 bits (342), Expect = 6e-34
 Identities = 62/113 (54%), Positives = 83/113 (73%)
 Frame = +3

Query: 201 LVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCR 380
           +VRE ++PGSK++KKE  EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ R
Sbjct: 56  IVREVEKPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVR 115

Query: 381 RRFYKNWYXCXKXXFTKXTXKWQDELGRKSIXXDFTXMXRYCTVVXVIAHTQM 539
           RRFYKNW    K  FTK   K+  + G+K I      M +Y ++V VIAHTQ+
Sbjct: 116 RRFYKNWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQI 168



 Score = 96.7 bits (230), Expect = 2e-20
 Identities = 39/50 (78%), Positives = 45/50 (90%)
 Frame = +2

Query: 50  FQHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTH 199
           F+HP HGS+GF P+KRS RHRGKVK+FPKDD SKP HLT+F+GYKAGMTH
Sbjct: 6   FEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTH 55


>11_01_0427 +
           3274817-3274901,3275587-3275697,3275979-3276283,
           3276406-3276815,3276942-3277200
          Length = 389

 Score =  140 bits (338), Expect = 2e-33
 Identities = 62/113 (54%), Positives = 82/113 (72%)
 Frame = +3

Query: 201 LVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCR 380
           +VRE ++PGSK++KKE  EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ R
Sbjct: 56  IVREVEKPGSKLHKKETCEAVTIIETPPIVVVGLVAYVKTPRGLRSLNSVWAQHLSEEVR 115

Query: 381 RRFYKNWYXCXKXXFTKXTXKWQDELGRKSIXXDFTXMXRYCTVVXVIAHTQM 539
           RRFYKNW    K  FTK   K+  + G+K I      M +Y +VV VI HTQ+
Sbjct: 116 RRFYKNWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASVVRVIVHTQI 168



 Score = 95.5 bits (227), Expect = 5e-20
 Identities = 38/50 (76%), Positives = 45/50 (90%)
 Frame = +2

Query: 50  FQHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTH 199
           F+HP HGS+GF P+KRS RHRGKVK+FPKDD +KP HLT+F+GYKAGMTH
Sbjct: 6   FEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTH 55


>01_05_0125 - 18382402-18382761,18382863-18383036
          Length = 177

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 384 DVDSLQTYAPPRQSTERVVHEGSQCIQQHRHKPSE 280
           ++ +L    PPR ST R+V E   C+ + R + +E
Sbjct: 47  ELGALLPNLPPRASTTRIVEEAIACVGELRARTAE 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,482,427
Number of Sequences: 37544
Number of extensions: 319250
Number of successful extensions: 691
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)