Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_H13
(884 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 186 4e-48
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce... 54 4e-08
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 29 0.88
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 28 1.5
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S... 28 1.5
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha... 27 2.7
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 27 2.7
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 4.7
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 26 6.2
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 26 6.2
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa... 26 8.2
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 186 bits (453), Expect = 4e-48
Identities = 85/152 (55%), Positives = 116/152 (76%)
Frame = +3
Query: 126 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHL 305
K+ YF K+ L ++Y F+V DNV SQQM +R LRG++ ++MGKNTM+R+A++ +
Sbjct: 8 KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67
Query: 306 DNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTG 485
++ P LE+LLP ++GNVGFVFT DL EVR+ ++ N + APARP AIAPL V +PA NTG
Sbjct: 68 NDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTG 127
Query: 486 LGPEKTSFFQALSIPTKISKGTIEIINDVHIL 581
+ P KTSFFQAL IPTKI++GTIEI +DVH++
Sbjct: 128 MEPGKTSFFQALGIPTKITRGTIEITSDVHLV 159
Score = 40.3 bits (90), Expect = 4e-04
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = +1
Query: 595 KVGASETTLFNMLNISPFSYGL 660
KVG SE TL NMLNISPF+YG+
Sbjct: 164 KVGPSEATLLNMLNISPFTYGM 185
>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 53.6 bits (123), Expect = 4e-08
Identities = 49/143 (34%), Positives = 72/143 (50%), Gaps = 6/143 (4%)
Frame = +3
Query: 63 KFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLR 242
K RS TL++ ++ K+ F + Q LD + +I N+ + +++IR +
Sbjct: 3 KSRRSKVLTLAQTEKKGHEG-KAALFSGVQQSLDSFDYMWIFDVTNMRNTYLKRIRDDWK 61
Query: 243 GSSIVLMGKNTMMRKAI-----KDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLL 407
GS I MGK +M KA+ ++H +N L KLL G VG +FT EV
Sbjct: 62 GSRI-FMGKTKVMAKALGHTPEEEHAENVSKLTKLL---HGAVGLLFTNSKPDEVIG-YF 116
Query: 408 ENKVQAP-ARPGAIAPLSVVIPA 473
E+ VQ AR GA+AP + VIPA
Sbjct: 117 ESFVQNDFARAGAVAPFTHVIPA 139
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 29.1 bits (62), Expect = 0.88
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 256 CSWEKTL*CAKPSKTTWTTIQPSRNCCHTSRATLAS 363
CS EKT C++ K+ T+ +PS CC ++T+ +
Sbjct: 264 CSTEKTSCCSQEKKSCCTSEKPS--CCSNGKSTVCA 297
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -2
Query: 562 MISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAMAP 437
+IS P + L+GI AW E S R + T+ +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330
>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 28.3 bits (60), Expect = 1.5
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = -1
Query: 605 APTLSPGLQDVYIVDDFNSTL*NLGRDRKSLEERGLLWTKAGVVGGNDD*QWG 447
AP L G D+ IVD NS + R + L ++G+L+ +GV GG + ++G
Sbjct: 92 APLLEKG--DI-IVDGGNSHYPDTTRRCEELAKKGILFVGSGVSGGEEGARYG 141
>SPAC823.13c |||mitochondrial inner membrane
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 322 RAGLLSRWSLMALRIIVFFPMSTILEPR 239
+A W LM + +++F + ILEPR
Sbjct: 162 QASTWGTWGLMGINVVLFVVVQLILEPR 189
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -2
Query: 400 LSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRII 275
L +T +S + PTLP + + S +G+LSR + + ++ I
Sbjct: 35 LKQTVLQSSSFKSFPTLPRLAARNISNSGILSRTTPVIIKQI 76
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 4.7
Identities = 25/97 (25%), Positives = 42/97 (43%)
Frame = +1
Query: 193 PITWARNRCSRSVSRYVAPVSCSWEKTL*CAKPSKTTWTTIQPSRNCCHTSRATLASCSP 372
P+T S SV PV+ S T+ + P +T T + NC TS + L + +P
Sbjct: 490 PLTTTNCTTSTSVPYTSTPVTSS-NYTISSSTPVTSTPVT---TTNCT-TSTSVLYTSTP 544
Query: 373 AETSWRSVTNCWRTKSKLQLVPVPLPHCQSSFPPTTP 483
++ + TNC T + + P+ + +TP
Sbjct: 545 VTSTPLATTNC-TTSTSVPYTSTPVTSSNYTISSSTP 580
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 26.2 bits (55), Expect = 6.2
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = -2
Query: 496 SGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPR---VNTKPTLPLMCGNSF 326
+G PV + + G++ P AGAW L N L T + +NT P PL G F
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVINT-PHNPL--GKIF 194
Query: 325 SRAGL 311
S L
Sbjct: 195 SEEEL 199
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 26.2 bits (55), Expect = 6.2
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -2
Query: 415 LFSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRIIVFFPMST 254
LFSN + R + R+ T L+ GN++ + W+L+A I F +T
Sbjct: 1512 LFSNCICRDNITLSRIGTNCMQQLLSGNAYRFE--VKDWNLVADMFIELFKETT 1563
>SPAC1783.07c |pap1|caf3, caf3|transcription factor
Caf3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 552
Score = 25.8 bits (54), Expect = 8.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 11 SHFEFCPARKSCVLSCP*ISSKSLRH 88
S E PA++ LSCP + SK + H
Sbjct: 486 SENEIVPAKERAYLSCPKVWSKIINH 511
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,826,397
Number of Sequences: 5004
Number of extensions: 81160
Number of successful extensions: 206
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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