Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_H12
         (853 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0116 - 26595570-26596607,26596964-26598353,26599386-265999...    32   0.67 
03_05_0183 - 21681673-21682524                                         29   3.6  
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764           29   6.2  
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742...    29   6.2  
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384...    28   8.2  
03_01_0625 + 4588861-4589190                                           28   8.2  

>01_06_0116 -
           26595570-26596607,26596964-26598353,26599386-26599923,
           26600562-26601453
          Length = 1285

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = -1

Query: 463 PPQSNSPPGSVLEPDHAGVLNG-DERFRHVT--TXHAWNETPCARRYYRPRTASAQ 305
           PP +    GS  +   +G L+   ER RH +  T HA  E P   R  RPRT+S +
Sbjct: 450 PPSAREQRGSADKSSGSGRLDALVERMRHGSKLTDHAKREIPYDERNIRPRTSSGR 505


>03_05_0183 - 21681673-21682524
          Length = 283

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 673 SQAFIATLLFDPSMSALPIIAXQNSPS 753
           SQAF A LL D + +A+P++  Q  P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255


>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
          Length = 640

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 376 TTXHAWNETPCARRYY 329
           TT  AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575


>01_06_1406 -
           37073548-37073822,37073892-37074111,37074200-37074246,
           37074404-37074576,37075161-37075238,37075751-37075813,
           37075889-37075961,37076150-37076189,37076302-37076368,
           37076719-37078472,37079128-37079230,37080041-37080078,
           37080221-37080347,37081944-37082152
          Length = 1088

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 384 RKRSSPFKTPA*SGSRTLPGGEFDWGGTSV 473
           +KR  P K PA S S+ LPG + + G  SV
Sbjct: 339 KKRGRPRKYPAPSNSKHLPGTDTELGNDSV 368


>03_02_0740 -
           10836752-10837052,10837756-10837814,10837901-10838476,
           10839965-10841686,10841776-10842173,10842264-10842318,
           10842989-10843048,10843444-10843540,10844885-10844955,
           10845029-10845109,10846054-10846124,10847951-10848119,
           10848521-10848683,10848752-10848942,10849037-10849168
          Length = 1381

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 463 PPQSNSPPGSVLEPDHAGVLNGDE 392
           P  +NS P +V +PD   +LNGDE
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDE 762


>03_01_0625 + 4588861-4589190
          Length = 109

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = -2

Query: 768 GEQSNAWRILXGNDRKSRHRRIKKQRRYERLAATSQLSPVVTFXAPLXKKLF 613
           G     W+++ G D K R R  ++ R+   + A +  S VVT+   +  + F
Sbjct: 20  GAAKEGWQVVSGGDGKLRRRVWEESRKLWVIVAPAIFSRVVTYSMNVITQAF 71


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,122,055
Number of Sequences: 37544
Number of extensions: 451540
Number of successful extensions: 1164
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1164
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)