Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_H11
         (851 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   285   4e-78
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   285   5e-78

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  285 bits (700), Expect = 4e-78
 Identities = 132/220 (60%), Positives = 157/220 (71%)
 Frame = +3

Query: 174 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 353
           LPFVFKAPIRPDLV  VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGG
Sbjct: 24  LPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGG 83

Query: 354 THRSGQGAFGNMCRGGRTFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHI 533
           THRSGQ AFGNMCR GR FAPTK WR+WH                          ARGH 
Sbjct: 84  THRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASAVAASGVPSLLLARGHR 143

Query: 534 IEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRPIQ 713
           IE+IPE+PLVV D VQ   KTK+AV  L+ +KA+ D++KV  S++LRAGKGK+RNRR +Q
Sbjct: 144 IEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQ 203

Query: 714 RKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPG 833
           R+GPL++FN+D G+ +AFRNIPGVE            APG
Sbjct: 204 RRGPLVVFNEDTGIVKAFRNIPGVEIVNVRRLNLLQLAPG 243


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  285 bits (699), Expect = 5e-78
 Identities = 132/220 (60%), Positives = 157/220 (71%)
 Frame = +3

Query: 174 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 353
           LPFVFKAPIRPDLV  VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGG
Sbjct: 24  LPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGG 83

Query: 354 THRSGQGAFGNMCRGGRTFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHI 533
           THRSGQ AFGNMCR GR FAPTK WR+WH                          ARGH 
Sbjct: 84  THRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLARGHR 143

Query: 534 IEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRPIQ 713
           IE+IPE+PLVV D VQ   KTK+AV  L+ +KA+ D++KV  S++LRAGKGK+RNRR +Q
Sbjct: 144 IEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQ 203

Query: 714 RKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPG 833
           R+GPL++FN+D G+ +AFRNIPGVE            APG
Sbjct: 204 RRGPLVVFNEDAGIVKAFRNIPGVEIVNVRRLNLLQLAPG 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,208,932
Number of Sequences: 5004
Number of extensions: 60653
Number of successful extensions: 154
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)