Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_H11
(851 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 244 7e-65
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 244 9e-65
10_02_0199 + 6668902-6669293,6669825-6669882 34 0.13
08_02_1278 - 25838146-25839411 32 0.67
03_05_0366 - 23505755-23506441 31 1.2
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390... 30 2.7
03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657 30 2.7
12_02_1229 + 27197464-27197481,27200438-27201583,27201935-272022... 29 3.6
09_04_0384 - 17153064-17154233 29 3.6
12_02_0030 + 12469707-12469902,12470337-12470658,12472208-124722... 29 6.2
04_04_0584 + 26381220-26381232,26381583-26381594,26381921-263820... 29 6.2
02_04_0457 + 23093020-23093343,23093798-23093806 29 6.2
01_06_0226 - 27684093-27685091 29 6.2
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 244 bits (597), Expect = 7e-65
Identities = 117/218 (53%), Positives = 143/218 (65%), Gaps = 1/218 (0%)
Frame = +3
Query: 183 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR 362
VF+AP+RPD+V VH +S N RQPY VS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR
Sbjct: 31 VFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHR 90
Query: 363 SGQGAFGNMCRGGRTFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEK 542
+GQGAFGNMCRGGR FAPTK WR+WH ARGH IE
Sbjct: 91 AGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRRVAVASALAATSVPSLVLARGHRIET 150
Query: 543 IPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRPIQRKG 722
+PELPLV++D + I KT QA+ L+++ A++D K S +R GKGKMRNRR I RKG
Sbjct: 151 VPELPLVISDSAESIEKTSQAIKILKQVGAYADAEKAKDSVGIRPGKGKMRNRRYINRKG 210
Query: 723 PLIIFNKD-QGLTRAFRNIPGVEXXXXXXXXXXXXAPG 833
PLI++ + + +AFRN+PGV+ APG
Sbjct: 211 PLIVYGTEGSKIVKAFRNLPGVDVANVERLNLLDLAPG 248
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 244 bits (596), Expect = 9e-65
Identities = 118/221 (53%), Positives = 144/221 (65%), Gaps = 1/221 (0%)
Frame = +3
Query: 174 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 353
+P V +APIRPD+V H +S N RQPY VS+ AGHQTSAESWGTGRAV+RIPRV GGG
Sbjct: 27 MPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGG 86
Query: 354 THRSGQGAFGNMCRGGRTFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHI 533
THR+GQGAFGNMCRGGR FAPTK WRRWH ARGH
Sbjct: 87 THRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRLRRIAVASALAATAVPSLVLARGHR 146
Query: 534 IEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRPIQ 713
IE +PE PLVV+D ++ I KT Q++ L+++ A++D K S +RAGKGKMRNRR I
Sbjct: 147 IEGVPEFPLVVSDSIESIEKTAQSIKVLKQIGAYADAEKTKDSVAIRAGKGKMRNRRYIN 206
Query: 714 RKGPLIIFNKD-QGLTRAFRNIPGVEXXXXXXXXXXXXAPG 833
RKGPLI++ + + +AFRN+PGV+ APG
Sbjct: 207 RKGPLIVYGTEGSKVVKAFRNLPGVDVANVERLNLLDLAPG 247
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 34.3 bits (75), Expect = 0.13
Identities = 20/48 (41%), Positives = 23/48 (47%)
Frame = +3
Query: 294 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRTFAPTKPWRRW 437
A+SW TGRA A + R R GG R A N G R WRR+
Sbjct: 36 AQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNREGG--GGWRRF 81
>08_02_1278 - 25838146-25839411
Length = 421
Score = 31.9 bits (69), Expect = 0.67
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = -1
Query: 623 APQEDDSLFGLVDLLDFVGYNQGKLGNLFNNVSSSL 516
A +E LF L+D+LD V +G+L LF+ S++L
Sbjct: 89 AAREPQRLFRLLDMLDAVARERGRLDELFSGESATL 124
>03_05_0366 - 23505755-23506441
Length = 228
Score = 31.1 bits (67), Expect = 1.2
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +3
Query: 180 FVFKAPIRPDLVNDVHVSMSKNSR-QPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGT 356
++ AP D +V S + R P C S E + +AES TG A R R+ G T
Sbjct: 108 WIHAAPTAADDEKEVARSNAHARRPDPRCPSDEEDEEEAAESGATGLAHTRAGRIHAGPT 167
Query: 357 HRSGQGA 377
+ + + A
Sbjct: 168 NDNDEEA 174
>03_01_0520 -
3900387-3900613,3900812-3900853,3902092-3902210,
3903633-3903712,3903829-3903856,3904151-3904272,
3904714-3904857,3904897-3906327
Length = 730
Score = 29.9 bits (64), Expect = 2.7
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -3
Query: 399 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 292
HH + H + YE+ + H + RQ QY QH
Sbjct: 150 HHQQYQQHHHQQQYEHQNRIHFQHHRQQQQYQQHQH 185
>03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657
Length = 390
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/34 (32%), Positives = 14/34 (41%)
Frame = -3
Query: 372 PDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPP 271
P + +HHHGH + Q H G PP
Sbjct: 33 PQEHHHHHHHGHHGHHHEQQQQQQHHHHLGPPPP 66
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = -3
Query: 369 DRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPP 271
D +HHH H G H Q QH PP
Sbjct: 32 DPQEHHHHHHHGHHGHHHEQQQQQQHHHHLGPP 64
>12_02_1229 +
27197464-27197481,27200438-27201583,27201935-27202201,
27202849-27202882,27202997-27203100,27203174-27203308,
27203367-27203511,27203864-27203880
Length = 621
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -1
Query: 215 DQVRTDGRLEHEREGLGCSPAPSHXSLNTPTVKVGLPIDSFRY 87
D+V +DG+ + + SP+ SH L +P+ GLP D+ +
Sbjct: 386 DRVPSDGKAQGSQHVRPMSPSSSHLILISPSHAFGLPNDAVAF 428
>09_04_0384 - 17153064-17154233
Length = 389
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = -3
Query: 825 PVSGGSAC*HSGAPHPGCCGRRESDPDPC*RL 730
P++ S GA P C GRR SDPD RL
Sbjct: 111 PIAAASLQIAKGALWPRCWGRRPSDPDRARRL 142
>12_02_0030 +
12469707-12469902,12470337-12470658,12472208-12472245,
12472486-12473573
Length = 547
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 306 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRTFAPTKPW 428
G G A + RV GGG+ G+GA + G T + W
Sbjct: 84 GAGGRGAGVRRVEGGGSGAVGEGARAAVLGGAATIGARRLW 124
>04_04_0584 +
26381220-26381232,26381583-26381594,26381921-26382028,
26382137-26382217,26382320-26382465,26382550-26382624,
26382709-26382756,26382845-26382994,26383081-26383140,
26383394-26384274,26384674-26385670,26385887-26385895
Length = 859
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +2
Query: 689 NAQPSSYPA*RAP--HNLQQGSGSDSRLPQHPGC 784
N P R+P +NLQ+G GS S++P H GC
Sbjct: 41 NMAPGRLAYARSPNIYNLQEGEGSSSKMP-HLGC 73
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +3
Query: 279 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 383
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
>01_06_0226 - 27684093-27685091
Length = 332
Score = 28.7 bits (61), Expect = 6.2
Identities = 20/50 (40%), Positives = 25/50 (50%)
Frame = +3
Query: 264 VSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRTFA 413
VS +G +A + G G V+ R RGGG G G FG + R TFA
Sbjct: 215 VSSRSGGVAAAGAGGGG--VSSSKRKRGGG----GGGGFGELARAVETFA 258
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,724,596
Number of Sequences: 37544
Number of extensions: 507627
Number of successful extensions: 1615
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1604
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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