Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_H11
         (851 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   251   5e-67
Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z29443-7|CAA82571.2|  497|Caenorhabditis elegans Hypothetical pr...    29   5.5  
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    29   5.5  
U00031-9|AAK18871.1|  470|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical p...    28   9.7  
AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical...    28   9.7  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  251 bits (614), Expect = 5e-67
 Identities = 120/220 (54%), Positives = 148/220 (67%)
 Frame = +3

Query: 174 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 353
           LP VF+ PIRPDLV+ +   + +N RQ + V+ +AG Q SAESWGTGRAVARIPRVRGGG
Sbjct: 23  LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAESWGTGRAVARIPRVRGGG 82

Query: 354 THRSGQGAFGNMCRGGRTFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHI 533
           THRSGQGAFGNMCRGG  FAP K +RRWH                         QARGH+
Sbjct: 83  THRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSAIAASGIPALLQARGHV 142

Query: 534 IEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRPIQ 713
           I+++ E+PLVV+DKV+   KTK+AV+FLRR   W+DI KVY S+R RAGKGK+RNR+  Q
Sbjct: 143 IDQVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQHKQ 202

Query: 714 RKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPG 833
           + GP++I+ +D    RAFRNIPGV+            APG
Sbjct: 203 KLGPVVIYGQDAECARAFRNIPGVDVMNVERLNLLKLAPG 242


>Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical
           protein F40F8.11 protein.
          Length = 472

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
 Frame = +3

Query: 243 NSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR---SGQGAFGNMCRGGRTFA 413
           N R    V K   H+    SW T     +  R  GGG  R   SG    G   RGGR   
Sbjct: 137 NKRGTKGVQKMPNHRLEGNSWETNGLQNQTARGGGGGRGRGRGSGGRGRGGFNRGGRFNG 196

Query: 414 PTKP 425
             KP
Sbjct: 197 APKP 200


>Z29443-7|CAA82571.2|  497|Caenorhabditis elegans Hypothetical
           protein T07C4.9a protein.
          Length = 497

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 695 QPSSYPA*RAPHNLQQGSGSDSRLPQHPGCGAP 793
           QPSS  + + P N+  G G  ++ P + G G P
Sbjct: 30  QPSSQQSSQEPSNMNSGGGYPNQQPSYGGYGQP 62


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 399 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 316
           HHD  +++H  + ++ HHHGH   G  H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145


>U00031-9|AAK18871.1|  470|Caenorhabditis elegans Hypothetical
           protein B0361.8 protein.
          Length = 470

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = -1

Query: 713 LDRTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQEDDSLFGLVDLLDFVGYN 561
           L+  +VA   L  TKT+RL+ +  IRP      + + L  + + L+ +GYN
Sbjct: 265 LNIESVAESLLEDTKTVRLLSVGQIRPEKNHKLQLEVLHDVKEPLEKMGYN 315


>Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical
           protein H38K22.1 protein.
          Length = 1570

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +3

Query: 564 VADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQ-RLRAGKGKMRNRRPIQRKGPLIIFN 740
           V   V E+ KTK  VI  + LKA ++ +K  K + R++A K  M     +    P   F+
Sbjct: 413 VVTGVTEVAKTKLEVISDKMLKACAERMKDKKPKVRIQAIKRLMDLYNHVMTSSPQPFFS 472

Query: 741 KD 746
           KD
Sbjct: 473 KD 474


>AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical
           protein H38K22.1 protein.
          Length = 1570

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +3

Query: 564 VADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQ-RLRAGKGKMRNRRPIQRKGPLIIFN 740
           V   V E+ KTK  VI  + LKA ++ +K  K + R++A K  M     +    P   F+
Sbjct: 413 VVTGVTEVAKTKLEVISDKMLKACAERMKDKKPKVRIQAIKRLMDLYNHVMTSSPQPFFS 472

Query: 741 KD 746
           KD
Sbjct: 473 KD 474


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,265,175
Number of Sequences: 27780
Number of extensions: 367131
Number of successful extensions: 1094
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)