Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_H10
(824 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 175 5e-45
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 170 2e-43
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 34 0.028
SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosacchar... 30 0.35
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 28 1.4
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.6
SPAC20G4.04c |hus1||checkpoint clamp complex protein Hus1|Schizo... 26 7.5
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 26 7.5
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 25 9.9
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 175 bits (427), Expect = 5e-45
Identities = 80/128 (62%), Positives = 99/128 (77%)
Frame = +2
Query: 77 VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRAWEKLVLAARAVV 256
VL ++D+ +LAA +H+G++N+ +ME YV+KRR+DG H+INL + WEKLVLAAR +
Sbjct: 10 VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69
Query: 257 XIENPADVFVISSRPFGQRAVLKFVAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLD 436
IENPADV VISSRP+G RAVLKF AHTGAT IAGRFTPG FTN I +REPRL+IV D
Sbjct: 70 TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTD 129
Query: 437 PAQDHQPL 460
P D Q +
Sbjct: 130 PRADAQAI 137
Score = 116 bits (280), Expect = 3e-27
Identities = 55/90 (61%), Positives = 66/90 (73%)
Frame = +1
Query: 436 PCTRPSTITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLR 615
P I EAS+VNIPVIALC+TDS L VD+AIP N K SIGL W+LLAREVLRLR
Sbjct: 130 PRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLR 189
Query: 616 GVLPRDQRWDVVVDLFFYRDPEXSEKDEQQ 705
G + R W+V+ DL+FYRDPE E++E+Q
Sbjct: 190 GNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 170 bits (414), Expect = 2e-43
Identities = 75/132 (56%), Positives = 100/132 (75%)
Frame = +2
Query: 65 GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRAWEKLVLAA 244
G ++L +ED+ ++LAA H+G++N+ +M+ YV+KRR+DG H++NL + WEKLVLAA
Sbjct: 5 GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64
Query: 245 RAVVXIENPADVFVISSRPFGQRAVLKFVAHTGATPIAGRFTPGAFTNQIQAAFREPRLL 424
R + IENPADV V+S+R +G RAVLKF AHTGAT IAGRFTPG FTN I +REPRL+
Sbjct: 65 RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLI 124
Query: 425 IVLDPAQDHQPL 460
+V DP D Q +
Sbjct: 125 VVTDPRADAQAI 136
Score = 121 bits (292), Expect = 1e-28
Identities = 60/107 (56%), Positives = 71/107 (66%)
Frame = +1
Query: 436 PCTRPSTITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLR 615
P I EAS+VNIPVIALC+TDS L VDIAIP N K SIGL+W+LLAREVLR+R
Sbjct: 129 PRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVR 188
Query: 616 GVLPRDQRWDVVVDLFFYRDPEXSEKDEQQAKEQAVVPXKPXVXAPV 756
G L R WDV+ DL+FYRDPE E++E+ K A + V V
Sbjct: 189 GTLSRSAPWDVMPDLYFYRDPEEVEREEEAKKAAAAAAEEAQVEEAV 235
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 33.9 bits (74), Expect = 0.028
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +1
Query: 430 IGPCTRPSTITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 597
+ P S EA ++P I + +TD+ R V IP N S L+ LL+R
Sbjct: 186 LNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241
>SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 30.3 bits (65), Expect = 0.35
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 12/123 (9%)
Frame = +2
Query: 140 ENVNFQMETYVYKRRADGTHVINLRRAWEKLVLAAR--AVVXIENPADVFVISSRPFGQR 313
E+ + + ET V + TH + +AW + + AV+ + P D+ R +R
Sbjct: 316 EDTSKKAETCVPAKPQKATHQLAPCKAWLRDYDTDQKFAVLLLNQPIDIPDDRFRTLWKR 375
Query: 314 AVLKFVAHTGATPIAGR-------FTPGAF---TNQIQAAFREPRLLIVLDPAQDHQPLL 463
A ++ A GA + + G F T++ +A ++E + IV DP Q+ +
Sbjct: 376 ASIRVCADGGANQLRNYDSSLKPDYVVGDFDSLTDETKAYYKEMGVNIVFDPCQNTTDFM 435
Query: 464 KLH 472
K H
Sbjct: 436 KCH 438
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 460 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 570
T A + + LC+ +S RF D+A+ NTK +H I
Sbjct: 75 TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 568 IGLMWWLLAREVLRLRGVLPRDQRWD 645
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPAC20G4.04c |hus1||checkpoint clamp complex protein
Hus1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 25.8 bits (54), Expect = 7.5
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Frame = +2
Query: 266 NPADVFVISSRPFGQRAVLKFV-AHTGATPIAGRFTPGAFTNQIQAAFREPRLLI----V 430
+P+ V IS P RA +FV + + + ++ A F E L+ +
Sbjct: 208 DPSQVEDISRHPSQTRAPEEFVHMRLDSKDLVNMLKISSVAKRVIACFCEGHALVLYVYI 267
Query: 431 LDPAQDHQPLLKLHMSTFL 487
DP +H +L ++ST++
Sbjct: 268 TDPEDEHTAVLTYYISTYV 286
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 25.8 bits (54), Expect = 7.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -3
Query: 270 GFSMXTTARAARTSFSQARRKLITWVPSAR 181
G+++ ++ AA+ SFS +K I W S R
Sbjct: 209 GYTISSSVIAAKLSFSVRAKKKIKWATSRR 238
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 25.4 bits (53), Expect = 9.9
Identities = 12/43 (27%), Positives = 18/43 (41%)
Frame = +3
Query: 168 MSTNDVLMVPM*STCVVPGKNLFWLLVLSXPSRTPLMCSSSHH 296
M+ N V + + T PG N FW L++ M H+
Sbjct: 920 MTLNPVFQIGLNGTTHSPGNNSFWPLIIRVSESAFKMHKDGHN 962
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,545,259
Number of Sequences: 5004
Number of extensions: 76855
Number of successful extensions: 191
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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