Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_H10
(824 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 180 1e-45
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 177 1e-44
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561... 29 4.5
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 5.9
09_06_0103 + 20873310-20873382,20873530-20873735 29 5.9
06_03_0543 + 21967787-21970261 29 5.9
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 29 5.9
02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749... 28 7.8
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 180 bits (438), Expect = 1e-45
Identities = 86/157 (54%), Positives = 109/157 (69%), Gaps = 1/157 (0%)
Frame = +2
Query: 47 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRAWE 226
++A G L+ E+DV MLAA HLG +N +FQME YVYKRR+DG ++INL + WE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 227 KLVLAARAVVXIENPADVFVISSRPFGQRAVLKFVAHTGATPIAGRFTPGAFTNQIQAAF 406
KL LAAR +V IENP D+ V S+RP+GQRAVLKF +TGA IAGR TPG FTNQ+Q +F
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120
Query: 407 REPRLLIVLDPAQDHQPLLKLHMSTFL*L-LCATQTP 514
EPRLLI+ DP DHQP+ + + + C T +P
Sbjct: 121 SEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSP 157
Score = 113 bits (271), Expect = 2e-25
Identities = 50/94 (53%), Positives = 68/94 (72%)
Frame = +1
Query: 436 PCTRPSTITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLR 615
P T I E++ NIP IA C+TDSP+R+VDI IP N K +SIG ++WLLAR VL++R
Sbjct: 131 PRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMR 190
Query: 616 GVLPRDQRWDVVVDLFFYRDPEXSEKDEQQAKEQ 717
G + +WDV+VDLFFYRDPE +++ E++A Q
Sbjct: 191 GTILPGHKWDVMVDLFFYRDPEEAKEQEEEAPAQ 224
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 177 bits (430), Expect = 1e-44
Identities = 83/146 (56%), Positives = 104/146 (71%), Gaps = 1/146 (0%)
Frame = +2
Query: 80 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRAWEKLVLAARAVVX 259
L+ E+D+ MLAA HLG +N +FQME YVYKRR DG ++INL + WEKL LAAR +V
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 260 IENPADVFVISSRPFGQRAVLKFVAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 439
IENP D+ V S+RP+GQRAVLKF +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDP 131
Query: 440 AQDHQPLLKLHMSTFL*L-LCATQTP 514
DHQP+ + + + C T +P
Sbjct: 132 RTDHQPIKESALGNIPTIAFCDTDSP 157
Score = 111 bits (268), Expect = 5e-25
Identities = 53/97 (54%), Positives = 68/97 (70%)
Frame = +1
Query: 436 PCTRPSTITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLR 615
P T I E++ NIP IA C+TDSP+R+VDI IP N K SIG ++WLLAR VL++R
Sbjct: 131 PRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMR 190
Query: 616 GVLPRDQRWDVVVDLFFYRDPEXSEKDEQQAKEQAVV 726
G + +WDV+VDLFFYRDPE E EQ+ +E A+V
Sbjct: 191 GTILPGHKWDVMVDLFFYRDPE--EAKEQEEEEAALV 225
>01_06_0902 +
32853708-32853739,32854787-32855596,32856094-32856157,
32856375-32856446
Length = 325
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +1
Query: 154 PDGDLCLQTTC*WYPCDQLASCLGKTCSGCSCCRXH 261
P +C+ T C C K CS CSC + H
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3
Query: 147 TFSAPRWVVAASILVTSSSLRASTSNP 67
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>09_06_0103 + 20873310-20873382,20873530-20873735
Length = 92
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +1
Query: 325 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 432
+CR+ RC YC G RC + DPS ++ +C+
Sbjct: 45 LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 574 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 663
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 28.7 bits (61), Expect = 5.9
Identities = 22/78 (28%), Positives = 27/78 (34%)
Frame = +1
Query: 100 CHQNACCNHPSWGRKC*LPDGDLCLQTTC*WYPCDQLASCLGKTCSGCSCCRXHREPR*C 279
CH C P GR+ P G + CD A+ G TC C H+ P C
Sbjct: 324 CHAGKCGGCPLQGRRT-CPCGKKDYPSL----DCDAEAATCGSTCEKVLGCGRHKCPERC 378
Query: 280 VRHLITALRSACCTEVCR 333
R T+ CR
Sbjct: 379 HRGSCVETCRLVITKSCR 396
>02_05_1052 + 33770355-33773981,33774217-33774336,33774880-33774996,
33775322-33775411,33775971-33776078,33776304-33776351
Length = 1369
Score = 28.3 bits (60), Expect = 7.8
Identities = 22/81 (27%), Positives = 34/81 (41%)
Frame = -1
Query: 665 KNKSTTTSQRWSRGSTPRSLNTSRANNHHIKPIEWEDLVLHGIAMSTNLSGESVLHKAIT 486
KN T + SRG++PR S K +++ + I M+T G S A +
Sbjct: 933 KNNRAMTVKIPSRGASPRRRLASEGFGTIYKSMDFSEKDRTSINMATPSRGMSPRRTARS 992
Query: 485 GMLTYEASVMVDGLVQGPIQS 423
G++ S+ GPI S
Sbjct: 993 GIVDMSKSMDFSEKCNGPISS 1013
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,057,512
Number of Sequences: 37544
Number of extensions: 577948
Number of successful extensions: 1599
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1599
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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