Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_G23
         (937 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0005 + 47929-48201,48663-48788,49009-49054,49188-49270,496...    29   5.3  
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298...    29   5.3  
04_01_0065 - 636957-637082,637165-637251,637365-637625,637695-63...    29   7.0  
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...    28   9.3  

>08_01_0005 +
           47929-48201,48663-48788,49009-49054,49188-49270,
           49651-49728,49831-49884,50004-50138,50222-51691
          Length = 754

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = -1

Query: 208 SYVARSESIMRDSDVAFSHSAALAIAQVRRNGNKNNISRRHFMTTDLLKLSRVQ*ANRAR 29
           S +ARS S  ++     S SAA +     +  N NN ++R+      L L      +RA 
Sbjct: 29  SLIARSSSNAKNESPTASSSAAASSNSKSKEDNNNNSTQRNTKWGPDLTLDPAVRKSRAS 88

Query: 28  XFQSR 14
            +QSR
Sbjct: 89  AYQSR 93


>01_01_0386 -
           2985563-2985986,2986301-2986390,2986529-2986668,
           2986798-2986893,2987003-2987042,2987760-2987887
          Length = 305

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -1

Query: 463 RGERSPRRWLQPRLAVPRQASTSVPRTPAKXCSPTPLRSNS 341
           R  RSPRR   P     R  + +  R+PA   S +P+R++S
Sbjct: 224 RDSRSPRRSASPPNGRNRSPTPNASRSPAPRDSRSPMRADS 264


>04_01_0065 -
           636957-637082,637165-637251,637365-637625,637695-638100,
           640036-640223
          Length = 355

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = -2

Query: 336 FVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVRGGSPDRTLRGASRS*GTVMLRF 157
           ++  +H   C+    G G+ N+S+  +    D +    G SPD  L G   +   ++ R 
Sbjct: 6   YLQSLHFN-CIRLPDGAGVVNMSLPIVLAIGDREKEEIGSSPDVALHGPDGAVLAILRRV 64

Query: 156 RILPH 142
            I PH
Sbjct: 65  EIYPH 69


>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 466 GRGERSPRRWLQPRLAVPRQASTSVPRTP 380
           GRG RS  R L+P LA+   A + +P  P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,823,314
Number of Sequences: 37544
Number of extensions: 426577
Number of successful extensions: 1267
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1266
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2682675460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)