Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_G22
         (848 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    25   0.67 
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   0.87 
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    24   1.5  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 25.4 bits (53), Expect = 0.67
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 6   EFACVSDVSAIENHFSRELK*VVPFIIGKNLKHLSSFTYS 125
           EF C++   AIE HF+ +   V   ++G +LK ++   Y+
Sbjct: 192 EFVCIATPEAIELHFTTDHPSVAYLLVG-SLKGIARQFYN 230


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 805 RVLVGVGPRASRRATL 758
           +VLV +GP  SR  TL
Sbjct: 72  KVLVPLGPETSRHTTL 87



 Score = 21.8 bits (44), Expect(2) = 0.87
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -1

Query: 455 HGPHSLRGRDSWTPEGS 405
           HG H L G  S  P GS
Sbjct: 138 HGLHGLHGLSSSAPTGS 154



 Score = 21.4 bits (43), Expect(2) = 0.87
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -1

Query: 527 KERNSRDI*SCRRGAGILFPTTACHGPHSLRG 432
           KE+ SR+    RR    L   T  HG H L G
Sbjct: 111 KEQLSREQRFLRRRLEQLTNQTGLHGLHGLHG 142


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 209 FLLRYRCLTHLCLCLPSDILYVYEIW-LNRI 120
           +LL  +CLT +CL   S I+    +W +N+I
Sbjct: 381 YLLGIQCLTVVCLAFWSFIVSTILLWFINKI 411


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,994
Number of Sequences: 438
Number of extensions: 5446
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)