Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_G19
(869 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 96 3e-20
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 79 5e-15
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 62 7e-10
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 53 2e-07
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 45 6e-05
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 45 6e-05
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 45 8e-05
AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical ... 42 4e-04
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 38 0.007
AC090999-1|AAK26146.1| 390|Caenorhabditis elegans Hypothetical ... 30 1.9
U29377-8|AAA68716.1| 218|Caenorhabditis elegans Hypothetical pr... 29 3.3
U41110-4|AAA82419.1| 575|Caenorhabditis elegans Hypothetical pr... 29 4.3
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 29 5.7
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 29 5.7
U23452-5|AAK31546.1| 304|Caenorhabditis elegans Hypothetical pr... 29 5.7
U40030-6|AAA81135.3| 431|Caenorhabditis elegans Hypothetical pr... 28 10.0
U40030-5|AAR12976.2| 506|Caenorhabditis elegans Hypothetical pr... 28 10.0
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 96.3 bits (229), Expect = 3e-20
Identities = 52/138 (37%), Positives = 81/138 (58%), Gaps = 2/138 (1%)
Frame = +2
Query: 125 LFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAG 304
++ D +KAFD++ H+ L+ KL ++ L++ + ++LSNRSFR R+ T S + T G
Sbjct: 17 IYLDFSKAFDRLPHDLLLDKLVSLRKNKNLLIWVNEFLSNRSFRVRIGQTLSSRKFATCG 76
Query: 305 VPQGSALSPLLFSLYINDIPRSPETHLAL--FADDTAIYYSCRKKALLHRRLQTAATTMG 478
VPQG+ LSPLLF +Y+NDI +A FADDT +Y S K LQ+A +
Sbjct: 77 VPQGAVLSPLLFGIYVNDISSILPEKVACKQFADDTKLYAS-TPKTESENNLQSALDAVV 135
Query: 479 QWFRKWRIDINPTKSTAV 532
W + ++ +N +K+ V
Sbjct: 136 DWTKGSKLTLNQSKTVHV 153
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 78.6 bits (185), Expect = 5e-15
Identities = 52/169 (30%), Positives = 84/169 (49%), Gaps = 3/169 (1%)
Frame = +2
Query: 41 HSCVHQVHRLTEHILLGLNRRKPIPTGALF--FDIAKAFDKVWHNGLIYKLYN-MGVPDR 211
HS V ++T I+ GLN + P P A+ D+ AFDKV L L G+ +
Sbjct: 443 HSTTTAVIQVTNDIIGGLNMKNP-PERAIMACLDLRAAFDKVPTKKLCNDLMEAQGIEPK 501
Query: 212 LVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQGSALSPLLFSLYINDIPRSPETHLAL 391
+ L + +YL R R + S+ + GVPQGS +SP LF+ Y+ D+P +T L
Sbjct: 502 IKLWLGNYLHKRLIRTSHDNHWSKWHTLLGGVPQGSVISPNLFTFYLKDMPTQQDTMLIS 561
Query: 392 FADDTAIYYSCRKKALLHRRLQTAATTMGQWFRKWRIDINPTKSTAVLF 538
+ADD +I +K ++Q + ++ ++ + I+ KST +F
Sbjct: 562 YADDMSIIARDKKIEKAAEKVQLHIDEIAKYLKERGMSISAEKSTVTVF 610
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 61.7 bits (143), Expect = 7e-10
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Frame = +2
Query: 143 KAFDKVWHNGLIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRH-VTAGVPQGS 319
KAFD+V H+ L+ KL++ G+ D+LS+R+F +V H +++GVP+GS
Sbjct: 2 KAFDQVNHSLLLQKLHDFGINPLFCNWFHDFLSSRTFSVKVNNHIDPNIHPISSGVPKGS 61
Query: 320 ALSPLLFSLYINDIPRS--PETHLALFADDTAIY 415
P LF ++IN + S P + FADD +Y
Sbjct: 62 VSGPFLFLIFINSLLLSVPPSISCSAFADDLKVY 95
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 53.2 bits (122), Expect = 2e-07
Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Frame = +2
Query: 182 KLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRH-VTAGVPQGSALSPLLFSLYIND 358
KL G+ +++L NR+F ++ S+ + +++GVPQGS PLLF L+IN+
Sbjct: 839 KLAKFGLDSLTCSWYKEFLENRTFSVKINKFVSKNSYPISSGVPQGSVSGPLLFILFINN 898
Query: 359 --IPRSPETHLALFADDTAIYYS 421
I +P +++ FADD I+++
Sbjct: 899 LLIDLAPTINISCFADDVKIFHT 921
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 45.2 bits (102), Expect = 6e-05
Identities = 32/108 (29%), Positives = 47/108 (43%)
Frame = +2
Query: 44 SCVHQVHRLTEHILLGLNRRKPIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLI 223
S + +H L LL + R IP +F D KAFD V H + L G + +
Sbjct: 664 STIDHIHSLQR--LLEVGREYQIPLTLVFIDFKKAFDSVEHQAIWKSLDEQGADGAYIDL 721
Query: 224 IRDYLSNRSFRYRVEGTRSRPRHVTAGVPQGSALSPLLFSLYINDIPR 367
+++ N + + R VT GV QG +SP LFS + + R
Sbjct: 722 LKECYKNCTTNF-TPFHRPVAVPVTKGVRQGDPISPNLFSACLEHVFR 768
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 45.2 bits (102), Expect = 6e-05
Identities = 32/108 (29%), Positives = 47/108 (43%)
Frame = +2
Query: 44 SCVHQVHRLTEHILLGLNRRKPIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLI 223
S + +H L LL + R IP +F D KAFD V H + L G + +
Sbjct: 403 STIDHIHSLQR--LLEVGREYQIPLTLVFIDFKKAFDSVEHQAIWKSLDEQGADGAYIDL 460
Query: 224 IRDYLSNRSFRYRVEGTRSRPRHVTAGVPQGSALSPLLFSLYINDIPR 367
+++ N + + R VT GV QG +SP LFS + + R
Sbjct: 461 LKECYKNCTTNF-TPFHRPVAVPVTKGVRQGDPISPNLFSACLEHVFR 507
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 44.8 bits (101), Expect = 8e-05
Identities = 32/108 (29%), Positives = 47/108 (43%)
Frame = +2
Query: 44 SCVHQVHRLTEHILLGLNRRKPIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLI 223
S + +H L LL + R IP +F D KAFD V H + L G + +
Sbjct: 493 STIDHIHSLQR--LLEVGREYQIPLTLVFIDFKKAFDTVEHQAIWKSLDEQGADGAYIDL 550
Query: 224 IRDYLSNRSFRYRVEGTRSRPRHVTAGVPQGSALSPLLFSLYINDIPR 367
+++ N + + R VT GV QG +SP LFS + + R
Sbjct: 551 LKECYKNCTTNF-TPFHRPVAVPVTKGVRQGDPISPNLFSACLEHVFR 597
>AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical
protein Y113G7B.12 protein.
Length = 1042
Score = 42.3 bits (95), Expect = 4e-04
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Frame = +2
Query: 125 LFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRH-VTA 301
+ F ++ AFDKV H LI KL + V L R +S ++F +V +H
Sbjct: 890 IHFKLSTAFDKVPHEFLISKLNDFNVHPTLRNWFRKLMSPKTFSVQVNDHLESEKHNCQI 949
Query: 302 GVPQGSALSPLLFSLYIN----DIPRSPETHLALFADDTAIY 415
G P+GS +F ++IN +IP + ++D IY
Sbjct: 950 GAPRGSESRQFMFLVFINSLLCEIPINISCSACAISEDLEIY 991
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 38.3 bits (85), Expect = 0.007
Identities = 24/81 (29%), Positives = 37/81 (45%)
Frame = +2
Query: 125 LFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAG 304
+F D KAFD V H + L G + + ++++ N + + R VT G
Sbjct: 40 VFIDFKKAFDSVEHQAIWKSLDEQGADEAYIDLLKECYKNCTTNF-TPFLRPITVPVTKG 98
Query: 305 VPQGSALSPLLFSLYINDIPR 367
V QG +SP LFS + + R
Sbjct: 99 VRQGDPISPNLFSACLEHVFR 119
>AC090999-1|AAK26146.1| 390|Caenorhabditis elegans Hypothetical
protein Y82E9BR.8 protein.
Length = 390
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -3
Query: 360 ISLIYKLNSNGERAEPCGTPAVT*RGRER 274
ISL S GER +PCGTP G E+
Sbjct: 50 ISLTNMPKSTGERTDPCGTPHTAFLGSEK 78
>U29377-8|AAA68716.1| 218|Caenorhabditis elegans Hypothetical
protein K05F1.9 protein.
Length = 218
Score = 29.5 bits (63), Expect = 3.3
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Frame = +3
Query: 285 PVTSQPESRKAPPSPRYYSVCISTIYPGLR-RPIWRSSPMTPPSTTRVGRRRCFIDDFRP 461
P T PE+ K YY +T+ + R +W+++ + G RR FID +P
Sbjct: 87 PATVIPENNKHY-FVVYYIKAANTVKEKIPVRDLWKAAASSE------GTRRVFIDFKKP 139
Query: 462 QLPPWDSGSGS-GASTLTPRKAQRCSSKGGR 551
+LPP ++ G G +K + K G+
Sbjct: 140 ELPPTEAEDGKMGDDKKKGKKDDKKEEKDGK 170
>U41110-4|AAA82419.1| 575|Caenorhabditis elegans Hypothetical
protein ZK682.5 protein.
Length = 575
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +2
Query: 14 TSSLDSXARHSCVHQVHRLTEHILLGLNRRKPIPTGALFFDI 139
T+SL S + V+Q + LT ++ LGLN +P GAL F +
Sbjct: 195 TNSLTSIPSSALVNQRNTLT-NLNLGLNSINEVPVGALDFPV 235
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 28.7 bits (61), Expect = 5.7
Identities = 32/98 (32%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Frame = +3
Query: 201 CQTGS-CSSYETTCRT-VRSDIESRE--RVPGPVTSQP-ESRKAPPSPRYYSVCISTIYP 365
C GS C S C ++D+ + E VP P TSQP + PP+ V I T+ P
Sbjct: 306 CGKGSICDSVIPVCVCPAQTDLSNGECISVPAP-TSQPVQVMTPPPTLPPVQVPIQTLPP 364
Query: 366 GLRRPIWRSSPMT-PPSTTRVGRRRCFIDDFRPQLPPW 476
R P +T PP T V + F RP +P +
Sbjct: 365 QTRPPQLPPVQITQPPIQTPV--QPIFFQTTRPPMPTY 400
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 28.7 bits (61), Expect = 5.7
Identities = 32/98 (32%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Frame = +3
Query: 201 CQTGS-CSSYETTCRT-VRSDIESRE--RVPGPVTSQP-ESRKAPPSPRYYSVCISTIYP 365
C GS C S C ++D+ + E VP P TSQP + PP+ V I T+ P
Sbjct: 403 CGKGSICDSVIPVCVCPAQTDLSNGECISVPAP-TSQPVQVMTPPPTLPPVQVPIQTLPP 461
Query: 366 GLRRPIWRSSPMT-PPSTTRVGRRRCFIDDFRPQLPPW 476
R P +T PP T V + F RP +P +
Sbjct: 462 QTRPPQLPPVQITQPPIQTPV--QPIFFQTTRPPMPTY 497
>U23452-5|AAK31546.1| 304|Caenorhabditis elegans Hypothetical
protein R07G3.6 protein.
Length = 304
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 285 PVTSQPESRKAPPSPRYYSVCISTIYPGLRRPIWRSSPMTPPSTTRVGR 431
P T+ + +P + +S +P LRR +S P PP+TT R
Sbjct: 131 PTTTTTPAPTTTTTPNFLEKSLSMFFPSLRRKP-QSIPTLPPTTTPTPR 178
>U40030-6|AAA81135.3| 431|Caenorhabditis elegans Hypothetical
protein T13C2.3a protein.
Length = 431
Score = 27.9 bits (59), Expect = 10.0
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 207 TGSCSSYETTCRTVRSDIESRERVPGPVTSQPESRKAPPSP 329
T + +S TT T ++ + P T+ PE K PP P
Sbjct: 320 TSTTTSTTTTTTTTTTEEPTTTTTSAPTTTTPEPSKYPPLP 360
>U40030-5|AAR12976.2| 506|Caenorhabditis elegans Hypothetical
protein T13C2.3b protein.
Length = 506
Score = 27.9 bits (59), Expect = 10.0
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 207 TGSCSSYETTCRTVRSDIESRERVPGPVTSQPESRKAPPSP 329
T + +S TT T ++ + P T+ PE K PP P
Sbjct: 395 TSTTTSTTTTTTTTTTEEPTTTTTSAPTTTTPEPSKYPPLP 435
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,952,343
Number of Sequences: 27780
Number of extensions: 411709
Number of successful extensions: 1304
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1297
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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