Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_G18
(837 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 41 2e-05
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 41 2e-05
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 41 2e-05
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 40 2e-05
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 40 2e-05
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 40 2e-05
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 40 2e-05
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 40 2e-05
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 40 2e-05
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 40 3e-05
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 40 3e-05
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 40 4e-05
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 40 4e-05
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 39 5e-05
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 39 5e-05
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 39 5e-05
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 38 9e-05
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 38 2e-04
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 38 2e-04
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 32 0.006
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 32 0.008
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 29 0.040
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 23 4.6
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 23 4.6
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 40.7 bits (91), Expect = 2e-05
Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = +3
Query: 120 STRSSQRTIGTPPPHSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAXEW 299
S + +R + ++ +TL + ++ E + A L++ W+D L WN E+
Sbjct: 65 SYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEY 123
Query: 300 -GCSTWLVXSERLWRPDVVLLNA 365
G + +LW+PD+++ N+
Sbjct: 124 GGVKDLRITPNKLWKPDILMYNS 146
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 40.7 bits (91), Expect = 2e-05
Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = +3
Query: 120 STRSSQRTIGTPPPHSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAXEW 299
S + +R + ++ +TL + ++ E + A L++ W+D L WN E+
Sbjct: 65 SYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEY 123
Query: 300 -GCSTWLVXSERLWRPDVVLLNA 365
G + +LW+PD+++ N+
Sbjct: 124 GGVKDLRITPNKLWKPDILMYNS 146
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 40.7 bits (91), Expect = 2e-05
Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Frame = +3
Query: 171 IVVNLTLHLRHA---NIRESESTVRIQADLQMNWIDKRLSWNAXEWGCSTWL-VXSERLW 338
+VV L L L N+++ T + L+ W D + W+ E+G T L V SE +W
Sbjct: 46 VVVKLGLRLSQLIDLNLKDQILTTNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIW 103
Query: 339 RPDVVLLNAXATTARGIXPPRPCILITARSPG*SAWTXPXI 461
PD+VL N A G+ IL G WT P I
Sbjct: 104 LPDIVLYN-NADGEYGVTTMTKAIL---HYTGKVLWTPPAI 140
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 40.3 bits (90), Expect = 2e-05
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 207 NIRESESTVRIQADLQMNWIDKRLSWNAXEW-GCSTWLVXSERLWRPDVVLLNA 365
++ E + A L++ W+D L WN E+ G + +LW+PD+++ N+
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNS 78
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 40.3 bits (90), Expect = 2e-05
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 207 NIRESESTVRIQADLQMNWIDKRLSWNAXEW-GCSTWLVXSERLWRPDVVLLNA 365
++ E + A L++ W+D L WN E+ G + +LW+PD+++ N+
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNS 78
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 40.3 bits (90), Expect = 2e-05
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 207 NIRESESTVRIQADLQMNWIDKRLSWNAXEW-GCSTWLVXSERLWRPDVVLLNA 365
++ E + A L++ W+D L WN E+ G + +LW+PD+++ N+
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNS 78
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 40.3 bits (90), Expect = 2e-05
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 207 NIRESESTVRIQADLQMNWIDKRLSWNAXEW-GCSTWLVXSERLWRPDVVLLNA 365
++ E + A L++ W+D L WN E+ G + +LW+PD+++ N+
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNS 78
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 40.3 bits (90), Expect = 2e-05
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 207 NIRESESTVRIQADLQMNWIDKRLSWNAXEW-GCSTWLVXSERLWRPDVVLLNA 365
++ E + A L++ W+D L WN E+ G + +LW+PD+++ N+
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNS 78
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 40.3 bits (90), Expect = 2e-05
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 207 NIRESESTVRIQADLQMNWIDKRLSWNAXEW-GCSTWLVXSERLWRPDVVLLNA 365
++ E + A L++ W+D L WN E+ G + +LW+PD+++ N+
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNS 78
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 39.9 bits (89), Expect = 3e-05
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +3
Query: 249 LQMNWIDKRLSWNAXEWGCSTWL-VXSERLWRPDVVLLN 362
++ +W D +L W+ E+G L V S+ +WRPD+VL N
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYN 115
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 39.9 bits (89), Expect = 3e-05
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = +3
Query: 138 RTIGTPPPHSKIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLSWNAXEWG-CST 311
R +G + + L L L N++ T + ++ W D +L WN ++G T
Sbjct: 37 RPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVW--VEQEWNDYKLKWNPDDYGGVDT 94
Query: 312 WLVXSERLWRPDVVLLN 362
V SE +W PD+VL N
Sbjct: 95 LHVPSEHIWLPDIVLYN 111
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 39.5 bits (88), Expect = 4e-05
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +3
Query: 168 KIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLSWNAXEWGCSTWL-VXSERLWR 341
++ + L L L N++ T + ++ +W D +L W E+G L V S+ +WR
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 342 PDVVLLN 362
PD+VL N
Sbjct: 113 PDIVLYN 119
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 39.5 bits (88), Expect = 4e-05
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +3
Query: 168 KIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLSWNAXEWGCSTWL-VXSERLWR 341
++ + L L L N++ T + ++ +W D +L W E+G L V S+ +WR
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 342 PDVVLLN 362
PD+VL N
Sbjct: 113 PDIVLYN 119
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 39.1 bits (87), Expect = 5e-05
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Frame = +3
Query: 153 PPPHSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAXEW-GCSTWLVXSE 329
P + ++ L ++H N+ E TV L++ W L+W + E+ ++ V S
Sbjct: 54 PEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLKLMWEQSHLTWKSSEFDSINSIRVKSY 113
Query: 330 RLWRPDVVLLNAXATTARGIXPPRPCILITA 422
+W PD+V+ + + P CI+ +
Sbjct: 114 EIWVPDIVMHSVTSVGIDLEMPSVECIVFNS 144
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 39.1 bits (87), Expect = 5e-05
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +3
Query: 171 IVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAXEW-GCSTWLVXSERLWRPD 347
+V L+LH ++ E + + W D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 348 VVLLN 362
+L N
Sbjct: 92 TILYN 96
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 39.1 bits (87), Expect = 5e-05
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 249 LQMNWIDKRLSWNAXEWGCSTWL-VXSERLWRPDVVLLN 362
++ W D +L WN E+G L V SE +W PD+VL N
Sbjct: 86 VEQRWNDYKLKWNPEEYGGVEMLYVPSENIWLPDIVLYN 124
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 38.3 bits (85), Expect = 9e-05
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +3
Query: 168 KIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLSWNAXEW-GCSTWLVXSERLWR 341
K+ VN L ++ N+ E ++ L+ W D +L W+ ++ G + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 342 PDVVLLN 362
PD+VL N
Sbjct: 111 PDIVLFN 117
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 37.5 bits (83), Expect = 2e-04
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Frame = +3
Query: 153 PPPHSKIVVNLTLHL--RHANIRESESTVRIQADLQMNWIDKRLSWNAXEW-GCSTWLVX 323
P +I N+T+ L + + S + + + + + W D LSW ++ G + V
Sbjct: 61 PISSHQIANNVTMQLLPKLMEFDDWTSVMELHSWMTLMWTDSHLSWKPSDFDGINYIYVK 120
Query: 324 SERLWRPDVVLLNAXATT--ARGIXPPRPCILITARS 428
S+ +W PD+ + N+ T GI PP C++ ++ S
Sbjct: 121 SDDIWVPDISVYNSGDMTFDQTGI-PPTTCLVFSSGS 156
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 37.5 bits (83), Expect = 2e-04
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +3
Query: 135 QRTIGTPPPHSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAXEWGCSTW 314
+R +G + LTL ++ ++ E + L++ W D + WN ++G
Sbjct: 39 ERPVGNESEPLVLSFGLTL-MQIIDVDEKNQLLITNLWLKLEWNDVNMRWNVSDYGGVRD 97
Query: 315 L-VXSERLWRPDVVLLNAXATTARGIXP 395
L + RLW+PDV++ N+ G P
Sbjct: 98 LRIPPHRLWKPDVLMYNSADEGFDGTYP 125
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 32.3 bits (70), Expect = 0.006
Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 4/92 (4%)
Frame = +3
Query: 156 PPHSK---IVVNLTLHLRHAN-IRESESTVRIQADLQMNWIDKRLSWNAXEWGCSTWLVX 323
P H K VV + +R + E + + + +W D RLS+ S +
Sbjct: 54 PTHGKGTPTVVKTNILIRSMGPVSELDMDYSMDCYFRQSWRDSRLSFLGPIKSLSLSIKM 113
Query: 324 SERLWRPDVVLLNAXATTARGIXPPRPCILIT 419
ER+WRPD N + I P + I+
Sbjct: 114 LERIWRPDTYFYNGKHSYVHTITVPNKLLRIS 145
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 31.9 bits (69), Expect = 0.008
Identities = 14/63 (22%), Positives = 28/63 (44%)
Frame = +3
Query: 210 IRESESTVRIQADLQMNWIDKRLSWNAXEWGCSTWLVXSERLWRPDVVLLNAXATTARGI 389
I E + T + + +W+D+RL++ + + + R+W+PD N + I
Sbjct: 44 ISEVDMTYSMDCYFRQSWVDRRLAFQGGKETLALSISMLARIWKPDTYFYNGKHSYLHTI 103
Query: 390 XPP 398
P
Sbjct: 104 TSP 106
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 29.5 bits (63), Expect = 0.040
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Frame = +3
Query: 174 VVNLTLHLRH-ANIRESESTVRIQADLQMNWIDKRLSWNAXEWGCS-TWLVXSERLWRPD 347
+V + L +R A I + + +Q + W+D+RL +N L + R+W PD
Sbjct: 60 IVRVNLFVRSIATISDIKMEYSVQLTFREQWLDERLRFNDFGGRLKYLTLTDASRVWMPD 119
Query: 348 VVLLNAXATTARGIXPPRPCILI 416
+ N I P I I
Sbjct: 120 LFFSNEKEGHFHNIIMPNVYIRI 142
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 22.6 bits (46), Expect = 4.6
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Frame = +3
Query: 171 IVVNLTLHLRHAN-IRESESTVRIQADLQMNWIDKRLSWN--AXEWGCSTWLVXSE---R 332
++V+ + + N I + R+ ++ +WI+ RL E G + E
Sbjct: 11 VLVDFNIFVADINSINVEDMDFRVDMFVRQSWIESRLDMPDYIFEEGDDYVTLPPEFFDS 70
Query: 333 LWRPDVVLLNA 365
LW+PD LNA
Sbjct: 71 LWQPDPYFLNA 81
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 22.6 bits (46), Expect = 4.6
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -2
Query: 314 PSAAAPLPCVPTQS 273
PSA AP+P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,644
Number of Sequences: 438
Number of extensions: 3455
Number of successful extensions: 46
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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