Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_G15
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    29   0.64 
SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ...    29   1.1  
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    27   2.6  
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    27   3.4  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   3.4  

>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 18/65 (27%), Positives = 33/65 (50%)
 Frame = +1

Query: 352 HLSKNNAGVLRPAQRGQKPRVEQKGKSWLDPXVQYT*GLRKHGLSILYYKEFLXRGARKV 531
           HL++N+ G L        P  ++ G++ +   +  T G++  G +  YY E L   A+K 
Sbjct: 403 HLNQNSFGDLLDLLYASLPCTDRAGRTVVH-HICLTAGIKGRGSASRYYLETLLNWAKKH 461

Query: 532 TTGDN 546
            +G+N
Sbjct: 462 ASGNN 466


>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 278

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -2

Query: 359 DRCTAPVKLPAWQCPRTGPRGSFKRRRAFPPRHHSAR-LERNTVRPPILST 210
           D     + LP+ + P   P+   K+ ++F P+HH  + +  ++ +P   +T
Sbjct: 148 DESVIDIPLPSEEYPFEDPKPREKKNKSFKPKHHKKQDINASSAQPKSTTT 198


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 556 PQASYPLW*LFWHLLXKTLYSKGSIGRA 473
           P   YP++   W LL  T Y K +IG+A
Sbjct: 3   PSIKYPIY--EWELLQDTYYQKSAIGKA 28


>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +2

Query: 350 YICQRITQVS*GQL--SEDRNLAWSKRAKAGLIXMFSTHRDCESTAY 484
           Y+C  +  +S G L  SED ++ W    K GLI  F    + E+  Y
Sbjct: 127 YVCPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQFIKDVNWENLDY 173


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = -1

Query: 531  NFSGTSX*KLFIVKDR*AVLSQSL 460
            N  G S  KLFIVKD   V+SQ L
Sbjct: 3491 NIGGRSPQKLFIVKDSGQVMSQDL 3514


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,229,454
Number of Sequences: 5004
Number of extensions: 63743
Number of successful extensions: 128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)