Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_G15
(855 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0014 - 2977053-2977296,2977719-2978098 31 1.5
03_05_1004 + 29621209-29621590,29622615-29622827,29622974-296233... 30 2.0
03_05_0183 - 21681673-21682524 29 4.7
06_03_1448 + 30235336-30236763 29 6.2
06_03_1443 + 30182018-30183445 29 6.2
06_03_1440 + 30166515-30167942 29 6.2
06_03_1437 + 30151030-30152457 29 6.2
06_03_1429 + 30100834-30102261 29 6.2
06_03_1425 + 30084383-30085810 29 6.2
06_03_1420 - 30053713-30055140 29 6.2
06_01_0437 + 3101449-3101521,3101872-3102232,3103766-3103958,310... 29 6.2
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 6.2
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 29 6.2
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 28 8.3
>09_02_0014 - 2977053-2977296,2977719-2978098
Length = 207
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +3
Query: 42 ENQRGKKTLLELDSXSGIVRRHXRCTISGRSFRAIVAEKPLLSLFHYLLGWAEAVRGR 215
E++RG T E+++ + + R TI R ++ ++PL+ +F L G A R
Sbjct: 59 EDRRGTVTTDEIETPNLLTRVEIEDTIIAREAELLIPKRPLILVFVVLFGSASTTTSR 116
>03_05_1004 +
29621209-29621590,29622615-29622827,29622974-29623337,
29623751-29624573
Length = 593
Score = 30.3 bits (65), Expect = 2.0
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +3
Query: 270 RKRSSPFKTPAWSGSRTLPGGEFDWG--GTSVKE*RRCPKASSARTETSRGAKGQKLA*S 443
R +SP+ +PA+ GS TL G F G G++ E RC + + SR A +
Sbjct: 183 RSLTSPY-SPAYFGSSTLGWGSFQLGYSGSADPEPGRCRRTDGKKWRCSRDAVADQ---K 238
Query: 444 XCSVHIGTAKAR 479
C H+ + R
Sbjct: 239 YCERHMNRGRHR 250
>03_05_0183 - 21681673-21682524
Length = 283
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 558 SQAFIATLLFDPSMSALPIIAKQNSPS 638
SQAF A LL D + +A+P++ Q P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255
>06_03_1448 + 30235336-30236763
Length = 475
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 334 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 197
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1443 + 30182018-30183445
Length = 475
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 334 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 197
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1440 + 30166515-30167942
Length = 475
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 334 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 197
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1437 + 30151030-30152457
Length = 475
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 334 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 197
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1429 + 30100834-30102261
Length = 475
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 334 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 197
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1425 + 30084383-30085810
Length = 475
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 334 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 197
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1420 - 30053713-30055140
Length = 475
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 334 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 197
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_01_0437 +
3101449-3101521,3101872-3102232,3103766-3103958,
3104051-3104848,3104997-3105143,3106024-3106377
Length = 641
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 226 GRTVFRSKR--AEW*RGGNARRRLKLPRGPVRGHCQAGSLTGA 348
G+T+ R R A W RG A RR +LP G +AG G+
Sbjct: 36 GQTLTRGPRTCAVWRRGRAAVRRRRLPAASAEGGAKAGRSLGS 78
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 28.7 bits (61), Expect = 6.2
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 262 TTLHAWNETPCARRYY 215
TT AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 270 RKRSSPFKTPAWSGSRTLPGGEFDWGGTSV 359
+KR P K PA S S+ LPG + + G SV
Sbjct: 339 KKRGRPRKYPAPSNSKHLPGTDTELGNDSV 368
>03_02_0740 -
10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 349 PPQSNSPPGSVLEPDHAGVLNGDE 278
P +NS P +V +PD +LNGDE
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDE 762
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,637,756
Number of Sequences: 37544
Number of extensions: 487093
Number of successful extensions: 1441
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1440
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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