Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_G09
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    27   2.6  
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||...    27   4.5  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    27   4.5  
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    26   6.0  

>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = +2

Query: 233 KGILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLI 412
           KG+  D+ F F T  S +   HR+   +L   +  K +  G  + D  K   K W +G  
Sbjct: 289 KGLSHDDVFLFPTGMSAIYNTHRILRLVLD--DSRKSVCFGFCYVDTLKILQK-WGSGCY 345

Query: 413 F 415
           F
Sbjct: 346 F 346


>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 467

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -2

Query: 499 DSISKRAVRQEVPYDEHETIRHAHVE*FENQTIVPDFVERFCDVEEESS 353
           +S+   +  + VP  +HE I     +  E+ T +P  ++R C++ +ESS
Sbjct: 275 NSLDNESCVRVVPSFDHEEIGSVSAQGAES-TFLPAVLQRICELGKESS 322


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +3

Query: 492 IESREPAPPHDLSQLESRKALSSHPSYLAYSSTIFPGRRRXI*LYSPTTRLFT 650
           + +  PAPP+  +        SS PS    +S  FP       L+SPT R  T
Sbjct: 233 LSTSTPAPPNS-NNANPSTLFSSIPSSRHTTSNHFPSNSAQSSLFSPTARPLT 284


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 684 SFRAQPXPLXQWXRKWRININPTEKYWRCY 773
           +FR  P P     + W IN+NP   YW  Y
Sbjct: 553 TFRKFPYP-----KHWDINLNPPYSYWLYY 577


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,137,967
Number of Sequences: 5004
Number of extensions: 61228
Number of successful extensions: 159
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)