Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_G09
(857 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 31 1.6
01_06_0734 + 31569017-31569358,31569832-31569906,31570009-315701... 30 2.7
04_04_1248 - 32051679-32052356,32053617-32053778,32054147-320542... 29 4.7
03_01_0141 + 1116833-1117082,1117658-1118574,1119417-1119579,111... 29 4.7
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943... 28 8.3
03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171 28 8.3
02_05_0860 - 32296743-32296769,32297328-32297357,32298432-322985... 28 8.3
01_01_0693 + 5355081-5355106,5355969-5356056,5356079-5356141,535... 28 8.3
>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 30.7 bits (66), Expect = 1.6
Identities = 37/128 (28%), Positives = 52/128 (40%)
Frame = +2
Query: 95 ADVIGIHKPGKPKNHPTSYRPISLLMSXXXXXXXXXXXXXXDFVSSKGILIDEQFGFRTN 274
A ++ I KPGK +N YRPISL + V + I +D Q GF
Sbjct: 971 AYIVLIQKPGK-ENTVDGYRPISL-QNCSVKILSKVLATRLQRVFLRMIHLD-QTGFLKG 1027
Query: 275 HSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFNMGVPDSLVL 454
+ + TE I R T + D KAFD V + L L G P++ +
Sbjct: 1028 RCISENLIYATELIQACYRRK--CQTIIVKLDFTKAFDSVIWSSLFKILAVRGFPENWIS 1085
Query: 455 IIRDFLSN 478
I+ LS+
Sbjct: 1086 WIKGLLSS 1093
>01_06_0734 +
31569017-31569358,31569832-31569906,31570009-31570159,
31570716-31570784,31570864-31571036,31571474-31571611,
31571747-31571872,31571951-31572049,31573175-31573298,
31573465-31573528,31573798-31573852,31573951-31574075,
31574228-31574301,31574436-31574485,31574722-31574808,
31574897-31574947,31575025-31575108,31575400-31575498
Length = 661
Score = 29.9 bits (64), Expect = 2.7
Identities = 21/50 (42%), Positives = 30/50 (60%)
Frame = +1
Query: 460 TGLLVEPLFSISSRGNPLLPTTSHSWSPARLCPLTPPI*LIRQRYSPVAA 609
TG+L+ L S +SR +P+ PT++ SPA P P L+R+ YS AA
Sbjct: 3 TGMLLRGLRSAASRTSPVFPTSAS--SPA---PYVSP--LLRRLYSAAAA 45
>04_04_1248 -
32051679-32052356,32053617-32053778,32054147-32054269,
32054686-32054793
Length = 356
Score = 29.1 bits (62), Expect = 4.7
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -3
Query: 450 TRLSGTPMLNSLKIKPLCQTLSNAFATSKKRAPVYNGFGRLSP 322
T LS +P L+ L +KP A T+K V G G LSP
Sbjct: 136 TNLSISPSLSLLHVKPRTSAKPTASTTAKNARRVGVGAGSLSP 178
>03_01_0141 +
1116833-1117082,1117658-1118574,1119417-1119579,
1119668-1120497,1120562-1120570
Length = 722
Score = 29.1 bits (62), Expect = 4.7
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = -3
Query: 525 GRGEERVPSTRYRKER-FDKKSRM-MSTRLSGTPMLNSLKIKPLCQTLSNAFATSKKRAP 352
G EE+ ++ +K FD + + M T SG +NS+ ++P+ + + ++ AP
Sbjct: 537 GSDEEQQETSNNKKTNGFDNTAAVSMDTLKSGDDSMNSVVVEPIKERVESSKTDVDTAAP 596
Query: 351 VYNGFGRLS 325
Y+ RLS
Sbjct: 597 FYSFVKRLS 605
>06_02_0297 -
13891954-13892556,13893019-13893855,13894179-13894394,
13895455-13895874,13896198-13896506
Length = 794
Score = 28.3 bits (60), Expect = 8.3
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = +2
Query: 359 LFFDVAKAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAG 538
L D KAFD + H+ ++ + +MG P + ++ S S + G + G
Sbjct: 454 LKLDFEKAFDTIEHSAILSVMQHMGFPLKWIEWVQMVFSTASSAVLLNGVPGNSFKCRRG 513
Query: 539 VPQG 550
V QG
Sbjct: 514 VRQG 517
>03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171
Length = 1054
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 507 PAPPHDLSQLESRKALSSHPSYLAYSSTIFPGRRRXI*LYSP 632
P P + +++ +K + +PS L+ S F GR+ LYSP
Sbjct: 240 PRPSKETARMIKKKLVEENPSVLSGSQPAFDGRKN---LYSP 278
>02_05_0860 -
32296743-32296769,32297328-32297357,32298432-32298503,
32298967-32299812
Length = 324
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -1
Query: 764 PVLFGGVDVYAPFSXPLS*GXGLRSEA 684
P+LFG +V+ P PLS G GL S A
Sbjct: 175 PMLFGQSNVFPPMVPPLSLGNGLVSGA 201
>01_01_0693 +
5355081-5355106,5355969-5356056,5356079-5356141,
5356607-5356705
Length = 91
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Frame = +2
Query: 266 RTNHSCVQQVHRLTEHILVGLN--RPKPLYTGALFFDVAKAFDKVWHNGLIFKLFN 427
RTN CV++ + +LVG N K + G L VA D W G I N
Sbjct: 21 RTNGKCVKETEAIRSELLVGENGINDKQIKKGLL---VASRVDGEWSRGTIGDALN 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,756,558
Number of Sequences: 37544
Number of extensions: 448455
Number of successful extensions: 1195
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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