Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_G06
         (815 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    27   2.4  
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    27   4.2  
SPAC222.11 |hem13||coproporphyrinogen III oxidase |Schizosacchar...    26   5.6  
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    26   7.4  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    25   9.7  

>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -1

Query: 266 YSVVSTGVGRLHLDQISGVLELWYASLRFSIGFITRGSFRAD 141
           +S +  G+G   LDQ +G+LE WY  + F+I  +   SF  D
Sbjct: 217 FSSLHPGLG--FLDQYTGILERWY--VLFNITMLRLVSFNMD 254


>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 499 RLDLKVLLFTXRQTKTKFGSHSN-ISVPHVEK 591
           R+D  VL    R TK + GSH N I VP  E+
Sbjct: 183 RIDASVLDVICRDTKDRSGSHVNRIYVPKAEQ 214


>SPAC222.11 |hem13||coproporphyrinogen III oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 312

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = -2

Query: 754 IRDCCRTYMPKVVPPASRTARYLRIXGDIXEYSLVQRAXVSARN 623
           ++DC  T++P  VP   +  + +    D  E+ L++R   +  N
Sbjct: 214 VKDCAHTFLPAYVPIMEK-RKNMEFTEDDKEFQLIRRGYYAEFN 256


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +1

Query: 535 QTKTKFGSHSNISVPHVEKLTELXNKKVLNYVRKLXPSAPANIXI 669
           Q+  K    S +   HV+K   L NK VL+ +     +  AN+ I
Sbjct: 299 QSIVKAAGPSRVKRAHVQKKNPLKNKAVLSRLNPYAKAYKANVKI 343


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 138 RVGSKRASCYKSDGKPQRCIPXFENAAYLVQ 230
           +VG KR  C+++ G    C   FEN  Y ++
Sbjct: 449 QVGYKRL-CFRTKGNGPMCFVEFENIPYAME 478


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,432,120
Number of Sequences: 5004
Number of extensions: 70005
Number of successful extensions: 167
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)