Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_G06
         (815 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_1037 - 10536547-10536585,10536814-10537102,10537202-105373...    30   2.5  
02_01_0542 + 3971675-3971845,3973791-3973865,3974129-3974608           29   4.4  
01_05_0551 + 23169751-23170491                                         29   4.4  
04_03_0289 + 13972020-13972077,13972444-13973301,13973850-139742...    29   5.8  
08_01_0343 - 3025577-3025810,3026428-3026505,3026630-3026748,302...    28   7.7  
01_06_0016 - 25590912-25591478                                         28   7.7  

>08_01_1037 -
           10536547-10536585,10536814-10537102,10537202-10537327,
           10537336-10538291,10538379-10538825,10538904-10539632
          Length = 861

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = +2

Query: 707 RWRDDLRHIRSTAVPNYRTGGRLQTCXFPRP 799
           +W  DL  IR TA PN   GGRL     P P
Sbjct: 471 QWPKDLIEIRVTARPNTAPGGRLPKRPTPAP 501


>02_01_0542 + 3971675-3971845,3973791-3973865,3974129-3974608
          Length = 241

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
 Frame = +3

Query: 465 YDITYVRIVFYSPRPQSFAIYXKTNE----DKV-WEPFQYFSASCR 587
           Y I   +++F  PRPQS       N     D++  EPF + S SC+
Sbjct: 84  YTINSAKVIFLKPRPQSRPFKGSGNVCLTCDRILQEPFHFCSLSCK 129


>01_05_0551 + 23169751-23170491
          Length = 246

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +2

Query: 728 HIRSTAVPNYRTGGRL-QTCXFPRPP 802
           HI S+A+P   T  RL  TC FPR P
Sbjct: 31  HIPSSAIPAKITSNRLLSTCRFPRTP 56


>04_03_0289 +
           13972020-13972077,13972444-13973301,13973850-13974235,
           13974249-13974323,13975824-13976139,13976284-13977113
          Length = 840

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -3

Query: 471 YHTLCPNVRSNSLDWGXGCLPSLSPT-ATKSGCPARGEGRLS 349
           + TL P VRS+S+    G   ++ P+ AT  GCP R  G LS
Sbjct: 17  WFTLNPTVRSSSVPGNQGINSTILPSAATLEGCP-RSCGNLS 57


>08_01_0343 -
           3025577-3025810,3026428-3026505,3026630-3026748,
           3027566-3027645,3028034-3028107,3028536-3028620,
           3028704-3028789,3028968-3029038,3029126-3029207,
           3029490-3029531,3029552-3029584,3029699-3029794,
           3030163-3030414,3030970-3031149,3032079-3032119,
           3032341-3032470,3032504-3032606,3032686-3032773,
           3033151-3033304,3033688-3033739,3033815-3033894,
           3034478-3034789,3034886-3034955,3035033-3035100,
           3035405-3035678,3036408-3036580,3037036-3037128,
           3037228-3037443
          Length = 1121

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -3

Query: 297 SQLMSVYSITLLRCLHRCWSPPSGPNKRRSRTXVCIFEVF 178
           S  MS +  + LRCLH   S P GP        V   ++F
Sbjct: 270 SSTMSRFYTSFLRCLHSVLSDPKGPLSAHVPGFVANLQIF 309


>01_06_0016 - 25590912-25591478
          Length = 188

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
 Frame = -1

Query: 287 CLYTV*LYSVVSTGVGRLHLD----QISGVLELWYASLRFSIGFITRG 156
           C Y+  ++S+V+  VG LHLD    + +  ++ W+ +L  S G   +G
Sbjct: 98  CRYSKRIWSMVANWVGYLHLDPRLWETTQTIKDWWETLAASAGIPKKG 145


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,924,231
Number of Sequences: 37544
Number of extensions: 513811
Number of successful extensions: 1256
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1256
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)