Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_G06
(815 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related... 174 5e-44
U39745-7|AAA80449.1| 612|Caenorhabditis elegans Uncoordinated p... 107 9e-24
M80241-1|AAA28157.1| 612|Caenorhabditis elegans unc-6 protein. 107 9e-24
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 73 2e-13
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 73 2e-13
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 73 2e-13
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat... 60 2e-09
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 59 4e-09
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 59 4e-09
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 59 4e-09
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 59 4e-09
AC024809-10|AAF59547.1| 272|Caenorhabditis elegans Hypothetical... 31 0.75
Z81032-5|CAL36491.1| 597|Caenorhabditis elegans Hypothetical pr... 30 2.3
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin... 30 2.3
U88314-7|AAF99887.2| 294|Caenorhabditis elegans Pharyngeal glan... 29 3.0
AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical ... 29 3.0
AF098996-3|AAC68707.2| 349|Caenorhabditis elegans Serpentine re... 29 4.0
Z77655-7|CAB01133.2| 221|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical pr... 29 5.3
AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like prot... 29 5.3
AF036702-8|AAR85905.1| 377|Caenorhabditis elegans Hypothetical ... 28 7.0
>U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related.
see also lmb-protein 2 protein.
Length = 1535
Score = 174 bits (424), Expect = 5e-44
Identities = 88/184 (47%), Positives = 118/184 (64%), Gaps = 6/184 (3%)
Frame = +3
Query: 144 GSKRASCY-KSDGKPQRCIPXFENAAYLVQMEATNTCGDNGVKLYCIQTSAGTSTRS-CD 317
G+ CY ++ +PQRC+P F NAA+ ++++ TNTCG +C+Q S T RS C+
Sbjct: 19 GADGNPCYDRATRQPQRCVPDFVNAAFNLEVQVTNTCGTKRPTKFCVQ-SGHTGQRSVCE 77
Query: 318 YCQPGQ--FS--SYYLTDLHHEQDNQTWWQSETMKEGIXYPNQVNLTLHLGKAYDITYVR 485
C FS + YLTD + +N+TWWQS+TM+EG YP NLTL LGK++DITYVR
Sbjct: 78 TCDDRHEGFSHPAKYLTDFN-VGNNETWWQSDTMQEGQQYPTTTNLTLVLGKSFDITYVR 136
Query: 486 IVFYSPRPQSFAIYXKTNEDKVWEPFQYFSASCRETYGVEXQKSAELRAETXALCTSEYS 665
+ F SPRP+SF IY KT+ D WEP+Q++S SCR TYG+ + E A CT E+S
Sbjct: 137 LKFISPRPESFTIYKKTHTDSEWEPWQFYSGSCRATYGLSDRAPILPGNEATAQCTKEFS 196
Query: 666 XISP 677
ISP
Sbjct: 197 DISP 200
Score = 51.2 bits (117), Expect = 9e-07
Identities = 22/38 (57%), Positives = 29/38 (76%)
Frame = +1
Query: 679 LSGGNVPFSTLEGRPSAYTFDSSPELQDWGTATDLXIS 792
++GGN+ FSTLEGRPSA+ F+ S LQ W TA+ + IS
Sbjct: 201 ITGGNIAFSTLEGRPSAHAFEESEVLQKWVTASAIRIS 238
>U39745-7|AAA80449.1| 612|Caenorhabditis elegans Uncoordinated
protein 6 protein.
Length = 612
Score = 107 bits (257), Expect = 9e-24
Identities = 62/173 (35%), Positives = 86/173 (49%), Gaps = 6/173 (3%)
Frame = +3
Query: 162 CYKSDGKPQRCIPXFENAAYLVQMEATNTCGDNGVKLYCIQTSA--GTSTRSCDYCQP-G 332
C+ G+P RC+P F NAA+ + A++TCG N YC G CD C
Sbjct: 37 CHDHTGRPVRCVPEFINAAFGKPVIASDTCGTNRPDKYCTVKEGPDGIIREQCDTCDARN 96
Query: 333 QFSSY---YLTDLHHEQDNQTWWQSETMKEGIXYPNQVNLTLHLGKAYDITYVRIVFYSP 503
F S+ LTDL+ N T W S P V+LTL LGK +++TYV + F S
Sbjct: 97 HFQSHPASLLTDLN-SIGNMTCWVSTPSLS----PQNVSLTLSLGKKFELTYVSMHFCSR 151
Query: 504 RPQSFAIYXKTNEDKVWEPFQYFSASCRETYGVEXQKSAELRAETXALCTSEY 662
P S A+Y + K W PFQ++S+ CR +G + S E A+CT+ +
Sbjct: 152 LPDSMALYKSADFGKTWTPFQFYSSECRRIFGRDPDVSITKSNEQEAVCTASH 204
Score = 46.8 bits (106), Expect = 2e-05
Identities = 22/36 (61%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Frame = +1
Query: 685 GGN-VPFSTLEGRPSAYTFDSSPELQDWGTATDLXI 789
GGN V F LE RPSA F++SP LQDW TATD+ +
Sbjct: 209 GGNRVAFPFLENRPSAQNFENSPVLQDWVTATDIKV 244
>M80241-1|AAA28157.1| 612|Caenorhabditis elegans unc-6 protein.
Length = 612
Score = 107 bits (257), Expect = 9e-24
Identities = 62/173 (35%), Positives = 86/173 (49%), Gaps = 6/173 (3%)
Frame = +3
Query: 162 CYKSDGKPQRCIPXFENAAYLVQMEATNTCGDNGVKLYCIQTSA--GTSTRSCDYCQP-G 332
C+ G+P RC+P F NAA+ + A++TCG N YC G CD C
Sbjct: 37 CHDHTGRPVRCVPEFINAAFGKPVIASDTCGTNRPDKYCTVKEGPDGIIREQCDTCDARN 96
Query: 333 QFSSY---YLTDLHHEQDNQTWWQSETMKEGIXYPNQVNLTLHLGKAYDITYVRIVFYSP 503
F S+ LTDL+ N T W S P V+LTL LGK +++TYV + F S
Sbjct: 97 HFQSHPASLLTDLN-SIGNMTCWVSTPSLS----PQNVSLTLSLGKKFELTYVSMHFCSR 151
Query: 504 RPQSFAIYXKTNEDKVWEPFQYFSASCRETYGVEXQKSAELRAETXALCTSEY 662
P S A+Y + K W PFQ++S+ CR +G + S E A+CT+ +
Sbjct: 152 LPDSMALYKSADFGKTWTPFQFYSSECRRIFGRDPDVSITKSNEQEAVCTASH 204
Score = 46.8 bits (106), Expect = 2e-05
Identities = 22/36 (61%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Frame = +1
Query: 685 GGN-VPFSTLEGRPSAYTFDSSPELQDWGTATDLXI 789
GGN V F LE RPSA F++SP LQDW TATD+ +
Sbjct: 209 GGNRVAFPFLENRPSAQNFENSPVLQDWVTATDIKV 244
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 73.3 bits (172), Expect = 2e-13
Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 12/172 (6%)
Frame = +3
Query: 198 PXFENAAYLVQMEATNTCGDNGVKLYC-------IQTSAGTSTRSCDYCQPGQFSSYYLT 356
P N A + AT+TCG + YC ++ + T + CD C +
Sbjct: 50 PNIFNLATNSLITATDTCGQYTAEEYCKLVEHVLLRKTTNTQSPQCDICDANNVHKRHPI 109
Query: 357 DLHHEQDNQTWWQSETMKEGIXYPNQVNLTLHLGKAYDITYVRIVF-YSPRPQSFAIYXK 533
+ + + WWQS ++ G+ + +VN+T+ L + Y + Y+ + SPRP ++ + K
Sbjct: 110 E-YAIDGTRRWWQSPSLANGLRF-EKVNITIDLRQEYQVAYIILKMGNSPRPGTWVL-EK 166
Query: 534 TNEDKVWEPFQYFS---ASCRETYGVEXQKSA-ELRAETXALCTSEYSXISP 677
+ + + +EP+QY++ A C +G+ + E CTSEYS I+P
Sbjct: 167 SLDGEYYEPWQYYAMQDAECMRQFGIPATTGVPRFQKEDEVHCTSEYSKITP 218
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 73.3 bits (172), Expect = 2e-13
Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 12/172 (6%)
Frame = +3
Query: 198 PXFENAAYLVQMEATNTCGDNGVKLYC-------IQTSAGTSTRSCDYCQPGQFSSYYLT 356
P N A + AT+TCG + YC ++ + T + CD C +
Sbjct: 50 PNIFNLATNSLITATDTCGQYTAEEYCKLVEHVLLRKTTNTQSPQCDICDANNVHKRHPI 109
Query: 357 DLHHEQDNQTWWQSETMKEGIXYPNQVNLTLHLGKAYDITYVRIVF-YSPRPQSFAIYXK 533
+ + + WWQS ++ G+ + +VN+T+ L + Y + Y+ + SPRP ++ + K
Sbjct: 110 E-YAIDGTRRWWQSPSLANGLRF-EKVNITIDLRQEYQVAYIILKMGNSPRPGTWVL-EK 166
Query: 534 TNEDKVWEPFQYFS---ASCRETYGVEXQKSA-ELRAETXALCTSEYSXISP 677
+ + + +EP+QY++ A C +G+ + E CTSEYS I+P
Sbjct: 167 SLDGEYYEPWQYYAMQDAECMRQFGIPATTGVPRFQKEDEVHCTSEYSKITP 218
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 73.3 bits (172), Expect = 2e-13
Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 12/172 (6%)
Frame = +3
Query: 198 PXFENAAYLVQMEATNTCGDNGVKLYC-------IQTSAGTSTRSCDYCQPGQFSSYYLT 356
P N A + AT+TCG + YC ++ + T + CD C +
Sbjct: 50 PNIFNLATNSLITATDTCGQYTAEEYCKLVEHVLLRKTTNTQSPQCDICDANNVHKRHPI 109
Query: 357 DLHHEQDNQTWWQSETMKEGIXYPNQVNLTLHLGKAYDITYVRIVF-YSPRPQSFAIYXK 533
+ + + WWQS ++ G+ + +VN+T+ L + Y + Y+ + SPRP ++ + K
Sbjct: 110 E-YAIDGTRRWWQSPSLANGLRF-EKVNITIDLRQEYQVAYIILKMGNSPRPGTWVL-EK 166
Query: 534 TNEDKVWEPFQYFS---ASCRETYGVEXQKSA-ELRAETXALCTSEYSXISP 677
+ + + +EP+QY++ A C +G+ + E CTSEYS I+P
Sbjct: 167 SLDGEYYEPWQYYAMQDAECMRQFGIPATTGVPRFQKEDEVHCTSEYSKITP 218
>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
see also lmb-protein 1 protein.
Length = 1067
Score = 59.7 bits (138), Expect = 2e-09
Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 13/163 (7%)
Frame = +3
Query: 228 QMEATNTCGDNGVKLYCIQTSAGTSTRSCDYC----------QPGQFSSYYLTDLHHEQD 377
Q++AT+TCG G + +CI + T+ C YC +P + S + D
Sbjct: 51 QLKATSTCGSQGRQRFCIVSHLEEQTK-CFYCDSRTEWKPQREPYRLSHRIENVVTEVMD 109
Query: 378 --NQTWWQSETMKEGIXYPNQVNLTLHLGKAYDITYVRIVFYSPRPQSFAIYXKTNEDKV 551
N+ W+QSE + V+++ L + T++ + F S RP + I + K
Sbjct: 110 DKNRNWYQSENGAQN------VSISFDLEAEFHFTHLIMTFKSFRPAAMIIERSADFGKT 163
Query: 552 WEPFQYFSASCRETY-GVEXQKSAELRAETXALCTSEYSXISP 677
W+ ++YF+ C ++ G+ + T +CTS+YS ++P
Sbjct: 164 WQVYRYFAYDCDSSFPGI---PEGPPKKHTDVICTSQYSDVAP 203
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical
protein K08C7.3b protein.
Length = 3672
Score = 58.8 bits (136), Expect = 4e-09
Identities = 32/126 (25%), Positives = 64/126 (50%), Gaps = 4/126 (3%)
Frame = +3
Query: 312 CDYCQPGQFSSYYLTDLHHEQDNQTWWQSETMKEGIXYPNQVNLTLHLGKAYDITYVRI- 488
C +C G +S+ ++ N +WW S + G+ + N+VN+T+ L + + + YV I
Sbjct: 101 CGHCNAGNENSHPAANM--VDGNNSWWMSPPLSRGLQH-NEVNITIDLEQEFHVAYVWIQ 157
Query: 489 VFYSPRPQSFAIYXKTNEDKVWEPFQYF---SASCRETYGVEXQKSAELRAETXALCTSE 659
+ SPRP S+ + T+ K ++P+ F +A C +G+E + + + C ++
Sbjct: 158 MANSPRPGSWVLERSTDHGKTYQPWFNFAENAAECMRRFGME--SLSPISEDDSVTCRTD 215
Query: 660 YSXISP 677
+ + P
Sbjct: 216 MASLQP 221
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical
protein K08C7.3a protein.
Length = 3704
Score = 58.8 bits (136), Expect = 4e-09
Identities = 32/126 (25%), Positives = 64/126 (50%), Gaps = 4/126 (3%)
Frame = +3
Query: 312 CDYCQPGQFSSYYLTDLHHEQDNQTWWQSETMKEGIXYPNQVNLTLHLGKAYDITYVRI- 488
C +C G +S+ ++ N +WW S + G+ + N+VN+T+ L + + + YV I
Sbjct: 101 CGHCNAGNENSHPAANM--VDGNNSWWMSPPLSRGLQH-NEVNITIDLEQEFHVAYVWIQ 157
Query: 489 VFYSPRPQSFAIYXKTNEDKVWEPFQYF---SASCRETYGVEXQKSAELRAETXALCTSE 659
+ SPRP S+ + T+ K ++P+ F +A C +G+E + + + C ++
Sbjct: 158 MANSPRPGSWVLERSTDHGKTYQPWFNFAENAAECMRRFGME--SLSPISEDDSVTCRTD 215
Query: 660 YSXISP 677
+ + P
Sbjct: 216 MASLQP 221
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 58.8 bits (136), Expect = 4e-09
Identities = 32/126 (25%), Positives = 64/126 (50%), Gaps = 4/126 (3%)
Frame = +3
Query: 312 CDYCQPGQFSSYYLTDLHHEQDNQTWWQSETMKEGIXYPNQVNLTLHLGKAYDITYVRI- 488
C +C G +S+ ++ N +WW S + G+ + N+VN+T+ L + + + YV I
Sbjct: 101 CGHCNAGNENSHPAANM--VDGNNSWWMSPPLSRGLQH-NEVNITIDLEQEFHVAYVWIQ 157
Query: 489 VFYSPRPQSFAIYXKTNEDKVWEPFQYF---SASCRETYGVEXQKSAELRAETXALCTSE 659
+ SPRP S+ + T+ K ++P+ F +A C +G+E + + + C ++
Sbjct: 158 MANSPRPGSWVLERSTDHGKTYQPWFNFAENAAECMRRFGME--SLSPISEDDSVTCRTD 215
Query: 660 YSXISP 677
+ + P
Sbjct: 216 MASLQP 221
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 58.8 bits (136), Expect = 4e-09
Identities = 32/126 (25%), Positives = 64/126 (50%), Gaps = 4/126 (3%)
Frame = +3
Query: 312 CDYCQPGQFSSYYLTDLHHEQDNQTWWQSETMKEGIXYPNQVNLTLHLGKAYDITYVRI- 488
C +C G +S+ ++ N +WW S + G+ + N+VN+T+ L + + + YV I
Sbjct: 101 CGHCNAGNENSHPAANM--VDGNNSWWMSPPLSRGLQH-NEVNITIDLEQEFHVAYVWIQ 157
Query: 489 VFYSPRPQSFAIYXKTNEDKVWEPFQYF---SASCRETYGVEXQKSAELRAETXALCTSE 659
+ SPRP S+ + T+ K ++P+ F +A C +G+E + + + C ++
Sbjct: 158 MANSPRPGSWVLERSTDHGKTYQPWFNFAENAAECMRRFGME--SLSPISEDDSVTCRTD 215
Query: 660 YSXISP 677
+ + P
Sbjct: 216 MASLQP 221
>AC024809-10|AAF59547.1| 272|Caenorhabditis elegans Hypothetical
protein Y53G8AR.1 protein.
Length = 272
Score = 31.5 bits (68), Expect = 0.75
Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Frame = +3
Query: 174 DGKPQRCIPXFENAAYLVQMEATNTCGD-NGVKLYCIQ-TSAGTSTRSCDYCQPGQFSSY 347
DG I E E C D +GV +C + SCDY G + Y
Sbjct: 97 DGLLTEIIEESEEEMQKALNEKKTLCQDKDGVNGFCPDHINPEPKAVSCDYVCYGYCTKY 156
Query: 348 YLTDLHHEQDNQTWWQSETMKE 413
LT N WW+++T+ E
Sbjct: 157 DLTCYLTPTSNTAWWKNQTIGE 178
>Z81032-5|CAL36491.1| 597|Caenorhabditis elegans Hypothetical
protein C02F4.2c protein.
Length = 597
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -1
Query: 809 GIEAVEEIXRSVAVPQSCNSGLLSNVYAEGRPSSVENGTLPP 684
G+ A I +SVA C+SG L + E R N +PP
Sbjct: 524 GLNAAYRIEQSVAAESGCDSGHLIQSFEEARRLDKINERMPP 565
>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
protein protein16, isoform d protein.
Length = 1030
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 772 PSPSPVIRDCCRTYMPKVVPPASRTA 695
PSP+P D R Y+P +PP R A
Sbjct: 948 PSPTPYSYDRARAYVPPALPPGYRLA 973
>U88314-7|AAF99887.2| 294|Caenorhabditis elegans Pharyngeal gland
toxin-relatedprotein 1 protein.
Length = 294
Score = 29.5 bits (63), Expect = 3.0
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Frame = -3
Query: 459 CPNV--RSNSLDWGX-GCLPSLSPTATKSGCPARGEGRLSNSWRTVLVDSSHRTL*TSQL 289
CP R NS C+ ++P+ S CPAR +++ T++ RT
Sbjct: 121 CPRTCGRCNSTSTSSTSCVDRVNPSTGVSDCPARAALCNDSNYYTLMTTQCPRTCGRCST 180
Query: 288 MSVYSITLLRCLHRCWSPPSGPNKRRSRTXVCIFEVFHRI 169
S + + C R +P +G + +R +C V++ I
Sbjct: 181 SSSTTSSSTTCADRV-NPTTGVSDCPARASLCNNSVYYDI 219
>AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical
protein Y46B2A.3 protein.
Length = 1145
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 186 QRCIPXFENAAYLVQMEATNTCGDNGVKLYCIQTSAGTSTR 308
QRC Y +Q+E NT G N + ++C S S R
Sbjct: 88 QRCPNKLRVIGYSLQIEPNNTAGANNIAVFCGDGSEPRSKR 128
>AF098996-3|AAC68707.2| 349|Caenorhabditis elegans Serpentine
receptor, class w protein79 protein.
Length = 349
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/32 (40%), Positives = 23/32 (71%), Gaps = 3/32 (9%)
Frame = +3
Query: 42 STRSDKMARP---LIYTYLLSILSVAVAXNYY 128
S R+DK+ARP + T+++S++S A++ YY
Sbjct: 129 SGRADKLARPSSGYLITFIISVISAALSGWYY 160
>Z77655-7|CAB01133.2| 221|Caenorhabditis elegans Hypothetical
protein C56A3.4 protein.
Length = 221
Score = 28.7 bits (61), Expect = 5.3
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = -1
Query: 284 LYTV*LY--SVVSTGVGRL--HLDQISGVLELWYASLRFSIGFITRGSFRADPRRLVVIX 117
LYTV Y S+V T VG + + ++ ++++ ++F +GFI + RA P R V
Sbjct: 86 LYTVVPYGVSIVYTVVGFIFPQVRIVTRIIDVLLHPIKFILGFIEKVDNRAAPIRRTVEA 145
Query: 116 SHG 108
HG
Sbjct: 146 IHG 148
>Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical protein
T06E4.3b protein.
Length = 2514
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +3
Query: 345 YYLTDLHHEQDNQTWWQSETMKEGIXYPNQVNLT-LHLGKAYDITYVRIVFYS 500
+ LT +H E+D+ T W T +E + N LT G A + YV YS
Sbjct: 1399 FILTVIHMERDSVTQWILSTFEEALTNTNHRRLTNSDRGPASFVFYVFDFIYS 1451
>Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical protein
T06E4.3a protein.
Length = 2531
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +3
Query: 345 YYLTDLHHEQDNQTWWQSETMKEGIXYPNQVNLT-LHLGKAYDITYVRIVFYS 500
+ LT +H E+D+ T W T +E + N LT G A + YV YS
Sbjct: 1399 FILTVIHMERDSVTQWILSTFEEALTNTNHRRLTNSDRGPASFVFYVFDFIYS 1451
>AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like protein
protein.
Length = 2514
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +3
Query: 345 YYLTDLHHEQDNQTWWQSETMKEGIXYPNQVNLT-LHLGKAYDITYVRIVFYS 500
+ LT +H E+D+ T W T +E + N LT G A + YV YS
Sbjct: 1399 FILTVIHMERDSVTQWILSTFEEALTNTNHRRLTNSDRGPASFVFYVFDFIYS 1451
>AF036702-8|AAR85905.1| 377|Caenorhabditis elegans Hypothetical
protein F33D4.5 protein.
Length = 377
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 496 IRLDLKVLLFTXRQTKTKFGSHSNISVPH 582
IRL L++ + T RQTK GS + VPH
Sbjct: 137 IRLRLELNMTTERQTKMVTGSDEIVPVPH 165
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,322,810
Number of Sequences: 27780
Number of extensions: 406640
Number of successful extensions: 1097
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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