Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_G01
(860 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ... 31 0.28
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 29 0.64
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 29 1.1
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 2.0
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 28 2.0
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 27 2.6
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1... 27 2.6
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 3.4
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 27 3.4
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 27 4.5
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 26 7.9
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 26 7.9
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce... 26 7.9
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 7.9
>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 324
Score = 30.7 bits (66), Expect = 0.28
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = +1
Query: 4 WDDLFMEEIVPLXVSAASAIPSLVNAFSSSKPPQTDNPSARSMAYA 141
W D+F + +P+ ++A IPSL A SK P T+ SM YA
Sbjct: 239 WFDIF--DFIPMIFTSALLIPSLYPALERSKLPFTEK-HVSSMEYA 281
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 29.5 bits (63), Expect = 0.64
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Frame = +3
Query: 522 LMHQATLPCDLGYINPIIKSPNSIHQPPPXLTSI-FHQSPEXRTKXSSPPGLSLRCHXKA 698
L+ QA P + G I P +I +P T S K S PGL+L+ K
Sbjct: 711 LLFQALKPDETGMYGRIKTLPPAIQRPGIYWTGKQIISSVLLNLKPSDRPGLNLKSKAKV 770
Query: 699 PSXYXTP 719
P Y +P
Sbjct: 771 PGKYWSP 777
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 28.7 bits (61), Expect = 1.1
Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +3
Query: 279 TGTETKSNSVTV-QSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTA 449
TG +T+ QSL N+S S I R N A FPS S +P VDL
Sbjct: 308 TGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQM 366
Query: 450 DVTVEGVNVLATPSSS 497
DV+ E L+TP S
Sbjct: 367 DVSDEEQRFLSTPLGS 382
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.9 bits (59), Expect = 2.0
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = +2
Query: 533 SHPPLRSRLHQPDHQIPEFHTPTTPXLNIHFPSIP*TPY*XEFPPGV-KPPLSSXGSIXV 709
S PP+R + P P+ PT P + P P P PP PPL + + V
Sbjct: 1688 STPPVRPQSAAP----PQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSV 1743
Query: 710 XNP 718
NP
Sbjct: 1744 PNP 1746
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 27.9 bits (59), Expect = 2.0
Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Frame = +2
Query: 506 YWRSRPYASSH----PPLRSRLHQPDHQIPEFHTPTTPXLNIHFPSIP*TPY*XEFP--P 667
Y R P +S+H PP H H P H P N ++P PY + P P
Sbjct: 146 YCRPEPLSSNHVRSCPPFPPTQHHHPHTRPPHHPPHPHFHNNNYP----PPYCFQSPVSP 201
Query: 668 GVKPPL 685
G PL
Sbjct: 202 GATVPL 207
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 27.5 bits (58), Expect = 2.6
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 677 PPLSSXGSIXVXNPSSLGMAXGFXPPIFX*MXNPXFPPY 793
P + GSI S+LG + GF PP F +P PY
Sbjct: 241 PQMLGPGSISSYTNSNLGPSAGFRPPTF--FSSPSPQPY 277
>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 27.5 bits (58), Expect = 2.6
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 526 IRARPPIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILR 407
I A P +R AS+ TP+ T+A+ QQ GI+R
Sbjct: 9 IPAEPSAAVRSGNAAASS-TPNMKTAAIQQQIDDTVGIMR 47
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.1 bits (57), Expect = 3.4
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 261 RLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD-AYLVN 374
R+Y L T ++S + PN S + +GY + A+L+N
Sbjct: 2840 RVYLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLIN 2878
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 27.1 bits (57), Expect = 3.4
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Frame = +2
Query: 578 IPEFHTPTTPXLNIHFPSIP*TPY*XEFPPGVKPPLSSXGSIXVXNPSSLG--MAXGFXP 751
+P + TPT P + + +P TPY S G+ N S++G M P
Sbjct: 587 MPMYPTPTMPYIPVGYPVPGYTPYMRNPSQHTSVAPSPNGTPTSGNSSTVGSPMIGYMAP 646
Query: 752 PIFX*MXNPXFPP 790
P FPP
Sbjct: 647 QFIPPYAMPQFPP 659
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 4.5
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +3
Query: 342 IKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 431
+K RD YL NLEA FPS+ +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 25.8 bits (54), Expect = 7.9
Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 3/67 (4%)
Frame = +2
Query: 470 QCAGHPFILSHYYWRSRPYASSHPPLRSRLHQPDHQ---IPEFHTPTTPXLNIHFPSIP* 640
Q G+ F + YW P PP+ ++L+ P I H T L H + P
Sbjct: 378 QVTGYQFDDENNYWMILPADHYDPPIEAKLNVPVKNMDYIKLHHVGTNTDLMTHDVASPY 437
Query: 641 TPY*XEF 661
P EF
Sbjct: 438 HPTNEEF 444
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 25.8 bits (54), Expect = 7.9
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -2
Query: 511 PIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILRLGAEGKTTAS 377
P ++E + TL +T+T V + + +L++ AEGK TAS
Sbjct: 507 PEEIKERIAIPKTLI-ATITLPDVSPNAKIELVLQIDAEGKLTAS 550
>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 357
Score = 25.8 bits (54), Expect = 7.9
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -2
Query: 100 GVWKKRKH*PRREWPKRQKRXKAQF 26
G WKK + + EW K ++ KA++
Sbjct: 119 GEWKKAREEDKAEWKKAREEDKAEW 143
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 7.9
Identities = 17/70 (24%), Positives = 26/70 (37%)
Frame = +3
Query: 279 TGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVT 458
T T S +T + +S+ Y + + + S P PVT C T+ V
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSV--PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539
Query: 459 VEGVNVLATP 488
V +TP
Sbjct: 540 YTSTPVTSTP 549
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,011,465
Number of Sequences: 5004
Number of extensions: 58945
Number of successful extensions: 214
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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