Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_G01
(860 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0373 + 2783596-2784933 31 0.89
03_04_0151 - 17729023-17729372,17729441-17730623,17730723-177309... 31 1.2
02_04_0122 - 19959137-19960043,19960150-19960714,19960932-19961202 31 1.2
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 29 3.6
04_01_0041 - 464695-464850,467485-469029 29 6.3
02_02_0315 + 8872199-8872815,8873141-8873243,8873346-8873405,887... 29 6.3
01_05_0227 - 19512866-19514983 29 6.3
02_05_0788 + 31758119-31758384,31758482-31758634,31759385-317595... 28 8.3
>07_01_0373 + 2783596-2784933
Length = 445
Score = 31.5 bits (68), Expect = 0.89
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = -1
Query: 92 EEEKALTKEGMAEAAETXKGTISSMNRS 9
E+++ LTK G + +ET KG++ S++RS
Sbjct: 151 EQQQQLTKSGCSSTSETSKGSVLSLSRS 178
>03_04_0151 -
17729023-17729372,17729441-17730623,17730723-17730953,
17730975-17731036,17732085-17732157,17737044-17737834,
17737932-17738004
Length = 920
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/68 (27%), Positives = 28/68 (41%)
Frame = +3
Query: 483 TPSSSRITIGGLALMHQATLPCDLGYINPIIKSPNSIHQPPPXLTSIFHQSPEXRTKXSS 662
TP+S + GG A T + ++K S LT+ SP+ R+ +S
Sbjct: 739 TPTSGNSSTGGAAKQEATTASTEAHSAKVVLKKSLSSPAISRSLTTTSSSSPKRRSNVTS 798
Query: 663 PPGLSLRC 686
P LRC
Sbjct: 799 HPSSVLRC 806
>02_04_0122 - 19959137-19960043,19960150-19960714,19960932-19961202
Length = 580
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/72 (26%), Positives = 27/72 (37%)
Frame = +2
Query: 578 IPEFHTPTTPXLNIHFPSIP*TPY*XEFPPGVKPPLSSXGSIXVXNPSSLGMAXGFXPPI 757
I E TT + P TP FPP PP + + N + + + PP
Sbjct: 68 IQEMLGGTTSCMGQEIKGTPKTPVPPPFPPAPPPPPNQNNLPNIPNYNPYNVNHQYIPPF 127
Query: 758 FX*MXNPXFPPY 793
+ P +PPY
Sbjct: 128 YY----PPYPPY 135
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 29.5 bits (63), Expect = 3.6
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +3
Query: 285 TETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSL--KIPVTVDLCWTTADVT 458
TE +N V V L SS GY D + ++ V + K+ V +D TAD++
Sbjct: 167 TEAGANRVLVCDLH--SSQAMGYFDIPVDHVYGQVMNLIGDVRGKVAVMMDDMIDTADIS 224
Query: 459 VEGVNVLATPSSSRITIGGLALMHQ 533
+ +N+L P G L+HQ
Sbjct: 225 LPNINILMKPIKLGTIAKGAELLHQ 249
>04_01_0041 - 464695-464850,467485-469029
Length = 566
Score = 28.7 bits (61), Expect = 6.3
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 246 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-APSLKIPV 422
+I R + D++ T +SN + V +LP VSS + Y D ++ + P P ++ V
Sbjct: 40 LISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAV 99
Query: 423 TVD 431
+D
Sbjct: 100 PLD 102
>02_02_0315 +
8872199-8872815,8873141-8873243,8873346-8873405,
8873558-8873632,8873718-8873792,8873876-8873956,
8874466-8874657,8874762-8874947,8875047-8875094
Length = 478
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Frame = +1
Query: 535 PPSPAISATSTRSS----NPRIPYTNHPXT*HPFSINPL 639
PP+ + TST ++ P PYTN+P P S +PL
Sbjct: 376 PPAAPVEETSTEAAPAEPTPLSPYTNYPDLKPPSSPSPL 414
>01_05_0227 - 19512866-19514983
Length = 705
Score = 28.7 bits (61), Expect = 6.3
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 463 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 371
S +T + +QQ + ++ LG GKTT ++L
Sbjct: 18 SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48
>02_05_0788 +
31758119-31758384,31758482-31758634,31759385-31759509,
31759650-31759678,31760943-31761008,31761059-31761125,
31761226-31761370,31761404-31761451,31762014-31762182,
31762645-31762779,31762858-31763064,31763608-31763735,
31763815-31763866,31764046-31764060,31764502-31764609
Length = 570
Score = 28.3 bits (60), Expect = 8.3
Identities = 21/86 (24%), Positives = 36/86 (41%)
Frame = +3
Query: 237 QRLIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 416
Q I + ++ L N TV + N + GY+ +N+ + PSLK
Sbjct: 198 QVFCIVLEMFFYQLLQLLKVPNEKTVNVIENAIQTLPGYQPPKHINIGEYISSHVPSLK- 256
Query: 417 PVTVDLCWTTADVTVEGVNVLATPSS 494
D C T ++ +EG++ L S+
Sbjct: 257 ----DFCEPTVEM-LEGMSALKALST 277
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,554,037
Number of Sequences: 37544
Number of extensions: 475751
Number of successful extensions: 1333
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1332
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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