Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_G01
(860 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X89894-1|CAA61984.1| 443|Homo sapiens nuclear receptor protein. 31 4.1
S81243-1|AAB36006.1| 684|Homo sapiens CHN protein. 31 4.1
D78579-1|BAA11419.1| 626|Homo sapiens neuron derived orphan rec... 31 4.1
AL359710-3|CAI95139.1| 443|Homo sapiens nuclear receptor subfam... 31 4.1
AL359710-2|CAI95138.1| 626|Homo sapiens nuclear receptor subfam... 31 4.1
AL359710-1|CAM16648.1| 637|Homo sapiens nuclear receptor subfam... 31 4.1
AL358937-4|CAI95320.1| 626|Homo sapiens nuclear receptor subfam... 31 4.1
AL358937-3|CAM22558.1| 637|Homo sapiens nuclear receptor subfam... 31 4.1
U37146-1|AAC50236.1| 1495|Homo sapiens silencing mediator of ret... 30 9.4
AY965853-1|AAX77219.1| 2461|Homo sapiens SMRTE-tau protein. 30 9.4
AF125672-1|AAD22973.1| 2507|Homo sapiens silencing mediator of r... 30 9.4
AF113003-1|AAD20946.1| 2517|Homo sapiens silencing mediator of r... 30 9.4
AB209089-1|BAD92326.1| 1469|Homo sapiens nuclear receptor co-rep... 30 9.4
>X89894-1|CAA61984.1| 443|Homo sapiens nuclear receptor protein.
Length = 443
Score = 31.5 bits (68), Expect = 4.1
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 255 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 416
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>S81243-1|AAB36006.1| 684|Homo sapiens CHN protein.
Length = 684
Score = 31.5 bits (68), Expect = 4.1
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 255 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 416
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 93 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 144
>D78579-1|BAA11419.1| 626|Homo sapiens neuron derived orphan
receptor protein.
Length = 626
Score = 31.5 bits (68), Expect = 4.1
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 255 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 416
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL359710-3|CAI95139.1| 443|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 443
Score = 31.5 bits (68), Expect = 4.1
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 255 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 416
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL359710-2|CAI95138.1| 626|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 626
Score = 31.5 bits (68), Expect = 4.1
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 255 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 416
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL359710-1|CAM16648.1| 637|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 637
Score = 31.5 bits (68), Expect = 4.1
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 255 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 416
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 46 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 97
>AL358937-4|CAI95320.1| 626|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 626
Score = 31.5 bits (68), Expect = 4.1
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 255 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 416
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL358937-3|CAM22558.1| 637|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 637
Score = 31.5 bits (68), Expect = 4.1
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 255 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 416
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 46 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 97
>U37146-1|AAC50236.1| 1495|Homo sapiens silencing mediator of
retinoid and thyroid hormone action protein.
Length = 1495
Score = 30.3 bits (65), Expect = 9.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 567 PIIKSPNSIHQPPPXLTSIFHQSPEXRTKXSSPPGLSLRCH 689
P++ P +I PPP ++S H S R + G+S++ H
Sbjct: 72 PVLPRPPTISNPPPLISSAKHPSVLERQIGAISQGMSVQLH 112
>AY965853-1|AAX77219.1| 2461|Homo sapiens SMRTE-tau protein.
Length = 2461
Score = 30.3 bits (65), Expect = 9.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 567 PIIKSPNSIHQPPPXLTSIFHQSPEXRTKXSSPPGLSLRCH 689
P++ P +I PPP ++S H S R + G+S++ H
Sbjct: 1084 PVLPRPPTISNPPPLISSAKHPSVLERQIGAISQGMSVQLH 1124
>AF125672-1|AAD22973.1| 2507|Homo sapiens silencing mediator of
retinoic acid and thyroid hormone receptor extended isofo
protein.
Length = 2507
Score = 30.3 bits (65), Expect = 9.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 567 PIIKSPNSIHQPPPXLTSIFHQSPEXRTKXSSPPGLSLRCH 689
P++ P +I PPP ++S H S R + G+S++ H
Sbjct: 1084 PVLPRPPTISNPPPLISSAKHPSVLERQIGAISQGMSVQLH 1124
>AF113003-1|AAD20946.1| 2517|Homo sapiens silencing mediator of
retinoic acid and thyroid hormone receptor alpha protein.
Length = 2517
Score = 30.3 bits (65), Expect = 9.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 567 PIIKSPNSIHQPPPXLTSIFHQSPEXRTKXSSPPGLSLRCH 689
P++ P +I PPP ++S H S R + G+S++ H
Sbjct: 1094 PVLPRPPTISNPPPLISSAKHPSVLERQIGAISQGMSVQLH 1134
>AB209089-1|BAD92326.1| 1469|Homo sapiens nuclear receptor
co-repressor 2 variant protein.
Length = 1469
Score = 30.3 bits (65), Expect = 9.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 567 PIIKSPNSIHQPPPXLTSIFHQSPEXRTKXSSPPGLSLRCH 689
P++ P +I PPP ++S H S R + G+S++ H
Sbjct: 1120 PVLPRPPTISNPPPLISSAKHPSVLERQIGAISQGMSVQLH 1160
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,397,916
Number of Sequences: 237096
Number of extensions: 2432014
Number of successful extensions: 6312
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6310
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10984231046
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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