Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_F23
(873 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1747 + 29188568-29188715,29188793-29189541 31 0.91
04_04_0959 + 29692740-29693035,29693102-29693267,29693433-296936... 31 1.2
04_01_0159 - 1824343-1824405,1824485-1824595,1825282-1825448,182... 30 2.1
07_03_0453 - 18362921-18363051,18363413-18363524 29 3.7
04_04_1658 - 35119623-35119754,35121033-35121121,35121205-351215... 29 3.7
03_02_0111 + 5688649-5688942 29 4.9
01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892 29 4.9
04_04_1104 - 30928475-30928501,30929008-30929110,30929287-309293... 29 6.4
02_05_0822 + 32025992-32026696,32027237-32027314,32027547-320277... 28 8.5
02_02_0522 - 11161385-11161537,11162513-11162668,11164176-111642... 28 8.5
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 8.5
02_01_0054 - 404464-405152,406087-406618 28 8.5
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 31.5 bits (68), Expect = 0.91
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +2
Query: 398 PPPGTTLSAPVYLITAPSPX*SAWTLALQFLCS*TIGPTTCRLARSSSVLGM 553
PPP TT++ V L TA + S + QF+C+ TTC + S S+ G+
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPGL 261
>04_04_0959 +
29692740-29693035,29693102-29693267,29693433-29693612,
29693703-29693771,29693888-29694088,29694187-29694240,
29694325-29694386,29694488-29694620,29694789-29694899,
29695008-29695104,29695638-29695714,29696129-29696194,
29696431-29696583,29697392-29697447,29697524-29697584,
29697656-29697766,29698010-29698144,29698217-29698447,
29699001-29699075,29699161-29699282,29699381-29699453,
29699538-29699642,29699728-29699895,29700079-29700148,
29700224-29700375,29700574-29700651,29700744-29700836,
29700961-29701098,29701237-29701276,29701350-29701423,
29701777-29701911,29702345-29702464,29702778-29702939
Length = 1287
Score = 31.1 bits (67), Expect = 1.2
Identities = 24/85 (28%), Positives = 31/85 (36%)
Frame = +2
Query: 89 CCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPAFETC*HS*VRVHRANTG 268
C CG V H L V LP R + A C + +R HR ++
Sbjct: 15 CFEEACGLAAVAAGQVRHSPLLRAPVPGLLPERQAPEGRRPLAASRCLPTCLRRHRRSSR 74
Query: 269 RSSNELDRQTTELERRGSGAAALGW 343
RS R++ L RR LGW
Sbjct: 75 RSHRRCRRRSPRLWRRSGSGFLLGW 99
>04_01_0159 -
1824343-1824405,1824485-1824595,1825282-1825448,
1825853-1826029,1826404-1826656
Length = 256
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -1
Query: 429 TGAESVVPGGGCSRV*QYHVRPPQAFRGHQPSAAAPLPLRSNSVVCRSNS 280
T + S GGCS + PP AFRG+ + P+ + V CR+ S
Sbjct: 59 TASASASASGGCSPAPPWAPSPP-AFRGNVKARYQPVMFNGSIVYCRTPS 107
>07_03_0453 - 18362921-18363051,18363413-18363524
Length = 80
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -2
Query: 767 GGTPXPGRPXAXAXGGFPXNTLWNIAHG 684
G P PGRP A A G F LW + G
Sbjct: 46 GVLPFPGRPVALASGWFAPGALWPASAG 73
>04_04_1658 - 35119623-35119754,35121033-35121121,35121205-35121599,
35122009-35122091,35122163-35124184,35124859-35124927,
35125050-35125130,35125215-35125308,35125435-35125499,
35125961-35126038,35126115-35126360
Length = 1117
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 800 SPGRPRRXEXXGGTPXPGRPXAXAXGGFP 714
+PG+ +R + G P P P A A GGFP
Sbjct: 990 APGK-QRGKAKGAPPPPAAPNAAAAGGFP 1017
>03_02_0111 + 5688649-5688942
Length = 97
Score = 29.1 bits (62), Expect = 4.9
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +2
Query: 299 TELERRGSGAAALGWCPRNACGGLTWYC*TRLQPPPGTTLSAPVYLITAPSPX*SAWT 472
T L + AAA G P G + + PPP L+ P+Y + AP SA+T
Sbjct: 28 TALPLTAAAAAATG--PHRRGRGRCYCSASDAPPPPPYVLTTPLYYVNAPPHMGSAYT 83
>01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892
Length = 291
Score = 29.1 bits (62), Expect = 4.9
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +1
Query: 310 TQGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSXIKRLDISTPIS 489
T G CS++L R+W +++ + LRA +N S + +D+STP +
Sbjct: 131 TVGRSFCSSFLA---RIWNNTTPIVDTGLSPGYAALLRALCPSNASATATTAIDVSTPAT 187
Query: 490 MQLDN 504
LDN
Sbjct: 188 --LDN 190
>04_04_1104 -
30928475-30928501,30929008-30929110,30929287-30929340,
30929803-30929895,30930063-30930140,30930416-30930527,
30930618-30930756,30930823-30930910,30930984-30931079,
30931675-30931781,30931874-30932009,30932089-30932186,
30932954-30933047,30933132-30933301,30933749-30933819,
30936066-30936194,30936552-30936654,30936764-30936907,
30937123-30937245,30937482-30937563,30939044-30939120,
30939261-30939315,30939365-30939443,30939544-30939620,
30939739-30939869,30939947-30940120,30940245-30940310,
30940937-30941572
Length = 1113
Score = 28.7 bits (61), Expect = 6.4
Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Frame = +3
Query: 696 VPQCVXRKTPPGXXXWAARXRGSPXXLXPPG--SPRAGXXRXALGPPXARGV 845
+P + K PP AA P PP S R G AL PP A+GV
Sbjct: 45 LPPQLMPKPPPSSSSSAAATPAPPAPAAPPPPTSRRGGGGGAALPPPQAQGV 96
>02_05_0822 +
32025992-32026696,32027237-32027314,32027547-32027713,
32027811-32027885,32028624-32028742,32028908-32029204,
32029275-32029362,32029467-32029572,32029727-32029837,
32030520-32030683,32031237-32031357,32031958-32032182,
32032267-32032457,32032658-32032825,32032911-32033016,
32033301-32033438,32033533-32033697,32033777-32033980,
32034341-32034535,32034603-32034674,32034797-32034949
Length = 1215
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -1
Query: 366 PPQAFR-GHQPSAAAPLPLRSNSVVCRSNS 280
PP+ FR GH P AAAP PLR++ S S
Sbjct: 32 PPEKFRSGHLPRAAAP-PLRTDDGSVASGS 60
>02_02_0522 -
11161385-11161537,11162513-11162668,11164176-11164298,
11164404-11164466,11164512-11164577,11165128-11165232,
11165336-11165435,11165520-11165590,11166037-11166093,
11167215-11167292,11167367-11167441,11168490-11168540,
11169015-11169094,11169560-11169660,11169749-11169810,
11170084-11170590
Length = 615
Score = 28.3 bits (60), Expect = 8.5
Identities = 21/70 (30%), Positives = 22/70 (31%), Gaps = 2/70 (2%)
Frame = -3
Query: 841 PRAXGGPRAXRXXPARGDPGGXSXXGEPR--XRAAQXXLPGGVFRXTHCGTLPTXXXHLG 668
PRA P RG GG GEP R PGG R G + G
Sbjct: 58 PRAVAAPPLRGAVAERGVGGGSDGGGEPPEIWRQPGEAPPGGGARGAEVGRIDVVRVAAG 117
Query: 667 XGXGXAXAVD 638
G G D
Sbjct: 118 GGGGGGDGSD 127
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 427 GRGERSPRRWLQPRLAVPRQASTSVPRTP 341
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>02_01_0054 - 404464-405152,406087-406618
Length = 406
Score = 28.3 bits (60), Expect = 8.5
Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Frame = -2
Query: 350 EDTSQVLQPHSPCVPTQSFVDPIHL-------KICLYSHGGLGLTNVSMSQMQGQVDYDF 192
E S + P V + +VDP L K +YS G L L ++ S G D
Sbjct: 260 EGFSAAVAPTRAAVGSPGYVDPFFLRTGIVSKKSDVYSFGVLLLEAITGSPAAGIPGPDG 319
Query: 191 GVGGGVPIVRCEERVDHEG 135
G GGG R RV EG
Sbjct: 320 GAGGGNLTARLLPRVRTEG 338
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,646,705
Number of Sequences: 37544
Number of extensions: 541477
Number of successful extensions: 1498
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1496
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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