Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_F19
(848 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 29 0.63
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 1.1
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ... 28 1.5
SPAC10F6.16 |mug134||endosulphine family protein|Schizosaccharom... 28 1.9
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 27 3.4
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 27 3.4
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 27 4.4
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce... 26 7.8
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 26 7.8
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 29.5 bits (63), Expect = 0.63
Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +2
Query: 278 TGTETKSNSVTV-QSLPNVS--SIIKXYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTA 448
TG +T+ QSL N+S S I R N A FPS S +P VDL
Sbjct: 308 TGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQM 366
Query: 449 DVTVEXVNVLATPSSS 496
DV+ E L+TP S
Sbjct: 367 DVSDEEQRFLSTPLGS 382
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.7 bits (61), Expect = 1.1
Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 4/111 (3%)
Frame = +2
Query: 278 TGTETKSNSVTVQSLPNVSSIIKXYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVT 457
T T S +T + +S+ Y + + + S P PVT C T+ V
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSV--PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539
Query: 458 VEXVNVLATPSSSRITIGGLALMHQATLPCDLGYI----NPIIKSPIXYTN 598
V +TP ++ ++ + +T Y P+ +P+ TN
Sbjct: 540 YTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 590
Score = 27.1 bits (57), Expect = 3.4
Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 6/109 (5%)
Frame = +2
Query: 290 TKSNSVTVQSLPNVSSIIKX--YRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVE 463
T +N T S+P S+ + +V + S P P+T C T+ +
Sbjct: 423 TTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYT 482
Query: 464 XVNVLATPSSSRITIGGLALMHQATLPCDLGYI----NPIIKSPIXYTN 598
V +TP ++ ++ + +T Y P+ +P+ TN
Sbjct: 483 STPVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 531
>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 324
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 4 WDDLFMEEIVPLXVSAASAIPSLVNAFSSSKPPQTD 111
W D+F + +P+ ++A IPSL A SK P T+
Sbjct: 239 WFDIF--DFIPMIFTSALLIPSLYPALERSKLPFTE 272
>SPAC10F6.16 |mug134||endosulphine family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 139
Score = 27.9 bits (59), Expect = 1.9
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -2
Query: 622 KWMLSLGVVGVXNRGFDDRVDVAEIAGE 539
KWMLS ++ + + + +VDVA+++ E
Sbjct: 6 KWMLSTTIIAMSSSNSEQKVDVAKLSPE 33
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 537 PSPAISATSTRSSNPRXHTPTTPRLN 614
PSP+ SA T+S P P T +LN
Sbjct: 406 PSPSASALKTQSHVPSAKVPPTSKLN 431
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 27.1 bits (57), Expect = 3.4
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +2
Query: 341 IKXYRDAYLVNLEAVVFPSAPSLKIPVTVD 430
+K RD YL NLEA FPS+ +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 26.6 bits (56), Expect = 4.4
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +3
Query: 549 ISATSTRSSNPRXHTPTT--PRLNIHFHQSPEXRTXRNSXRXLKPPXVIXRLHQR 707
+ + T+SS PR PTT P++N H T ++ R + PP + +++ +
Sbjct: 411 VENSQTQSSTPRKPLPTTTSPKVNPEPHSESISDTRPSTPRKV-PPSTVPKMNPK 464
>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 357
Score = 25.8 bits (54), Expect = 7.8
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -2
Query: 100 GVWKKRKH*PRREWPKRQKRXKAQF 26
G WKK + + EW K ++ KA++
Sbjct: 119 GEWKKAREEDKAEWKKAREEDKAEW 143
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.8 bits (54), Expect = 7.8
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = +3
Query: 537 PSPAISATSTRS---SNPRXHTPTTPRLNIHFHQSP 635
P P+IS T+T S S H PTTP HF +P
Sbjct: 273 PKPSISTTTTGSSYRSAESSHAPTTPD---HFKLTP 305
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,818,896
Number of Sequences: 5004
Number of extensions: 48822
Number of successful extensions: 168
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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