Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_F19
         (848 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333...    32   0.66 
07_01_0373 + 2783596-2784933                                           31   0.88 
11_06_0610 - 25449085-25453284                                         29   6.2  
09_02_0082 - 4060018-4061604                                           29   6.2  
03_06_0145 - 31973924-31975837                                         29   6.2  
09_02_0252 - 6315834-6315959,6316074-6317018                           28   8.2  
06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-19...    28   8.2  
04_01_0041 - 464695-464850,467485-469029                               28   8.2  

>01_01_0448 -
           3332238-3332330,3332414-3332481,3332570-3332618,
           3332716-3332798,3332900-3333023,3333389-3333486,
           3333555-3333634,3333712-3333782,3333872-3333953,
           3334158-3334237,3334365-3334416,3334843-3334958
          Length = 331

 Score = 31.9 bits (69), Expect = 0.66
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +3

Query: 546 AISATSTRSSNPRXHTPTTPRLNIHFHQS 632
           A S+T+TR S PR H PTTP  ++   +S
Sbjct: 2   AASSTATRLSPPRLHAPTTPSPHLPLRRS 30


>07_01_0373 + 2783596-2784933
          Length = 445

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 12/28 (42%), Positives = 21/28 (75%)
 Frame = -1

Query: 92  EEEKALTKEGMAEAAETXKGTISSMNRS 9
           E+++ LTK G +  +ET KG++ S++RS
Sbjct: 151 EQQQQLTKSGCSSTSETSKGSVLSLSRS 178


>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 534 PPSPAISATSTRSSNPRXHTPTTPRLNIHFHQSP 635
           PP+P   A+S     P  HTP+ P+      +SP
Sbjct: 651 PPTPESKASSPPPPTPEGHTPSPPKSTPPTEKSP 684


>09_02_0082 - 4060018-4061604
          Length = 528

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
 Frame = +2

Query: 401 PSLKIPVTVDLCWTTADVTVEXVNVLATPSSSRITIGGLALMHQATLPCDLGYINPIIKS 580
           PS+ +P+ + +  TTA  +       ++ ++ R  I  LAL   A   C    ++P   +
Sbjct: 117 PSVPVPLGLTMSPTTAHYSFSYGGASSSSATPRAPIAPLALRAPAPHLCVPRVLSPPAPT 176

Query: 581 -PIXYTNHPQT*HPFPSIP*TP 643
            P+  T+ P    P P +P TP
Sbjct: 177 PPVLATHVPTPPAPAPPVP-TP 197


>03_06_0145 - 31973924-31975837
          Length = 637

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
 Frame = +3

Query: 534 PPSPAISATS--TRSSNPRXHTPTTPRLNIHFHQSPEXRTXRNSXRXLKPPXVIXRLHQR 707
           PP+PA+ A S  T    PR  T   PRL   +    +    ++      PP V+      
Sbjct: 392 PPTPAVVAASRATNPPPPRRRTSRAPRLPWRYRPVIDEHKSKSGDAPPTPPAVMVSPAAT 451

Query: 708 XXPP 719
             PP
Sbjct: 452 SPPP 455


>09_02_0252 - 6315834-6315959,6316074-6317018
          Length = 356

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +3

Query: 534 PPSPAISATSTRSSNPRXHTP--TTPRLN 614
           P SP +S +S+R+ +PR H P   TP  N
Sbjct: 46  PSSPRLSTSSSRTPSPRAHRPRAATPFAN 74


>06_01_0018 +
           194295-194640,194679-194917,195737-195885,196248-196342,
           196685-196780,197248-197399,198683-198823,199068-199319,
           199463-199603,199686-200003,200146-200232,201025-202006,
           202091-202179,202968-203072,203155-204306,204844-205359,
           205455-205650,206299-207182
          Length = 1979

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 537 PSPAISATSTRSSNPRXHTPTTP 605
           PSP  +A  TRSS+ R H   TP
Sbjct: 9   PSPTSTARETRSSSARGHASPTP 31


>04_01_0041 - 464695-464850,467485-469029
          Length = 566

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +2

Query: 245 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKXYRDAYLVNLEAVVFPS-APSLKIPV 421
           +I   R + D++ T  +SN + V +LP VSS  + Y D ++   +    P   P  ++ V
Sbjct: 40  LISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAV 99

Query: 422 TVD 430
            +D
Sbjct: 100 PLD 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,003,032
Number of Sequences: 37544
Number of extensions: 374168
Number of successful extensions: 946
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)