Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_F16
(891 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 52 7e-09
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 52 9e-09
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 52 9e-09
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 52 9e-09
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 51 2e-08
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 51 2e-08
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 51 2e-08
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 50 3e-08
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 50 4e-08
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 49 5e-08
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 49 7e-08
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 49 7e-08
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 48 9e-08
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 48 9e-08
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 48 9e-08
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 48 9e-08
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 48 1e-07
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 48 1e-07
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 48 2e-07
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 47 3e-07
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 41 1e-05
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 40 3e-05
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 38 9e-05
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 38 9e-05
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 38 9e-05
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 31 0.011
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 30 0.025
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 24 1.6
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 23 4.9
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 52.0 bits (119), Expect = 7e-09
Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Frame = +3
Query: 234 KIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWR 407
K+ VN L ++ N+ E ++ L+ W D +L W+ ++ G + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 408 PDVVLLNAAATTAGDYALRAR----VSNNGSVSWIKRLDISTPISMXLDNWPNDMHTCPF 575
PD+VL N A G+Y +R + + NG V W+ + ++ + +P D TC
Sbjct: 111 PDIVLFNNA---DGNYEVRYKSNVLIYPNGDVLWVPPAIYQSSCTIDVTYFPFDQQTCIM 167
Query: 576 XFRS 587
F S
Sbjct: 168 KFGS 171
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 51.6 bits (118), Expect = 9e-09
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
Frame = +3
Query: 276 IRESESTVRIQADLQMNWIDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLNAAAT---TA 446
I E + T + + +W+D+RL++ G+ + + R+W+PD N + T
Sbjct: 44 ISEVDMTYSMDCYFRQSWVDRRLAFQGGKETLALSISMLARIWKPDTYFYNGKHSYLHTI 103
Query: 447 GDYALRARVSNNGSVSWIKRLDISTPISMXLDNWPNDMHTCPFXFRS 587
R+ +G V + RL I M L+N+P D CP F S
Sbjct: 104 TSPNKFVRLYQDGRVLYSSRLTIKAGCPMNLENFPMDTQRCPLQFGS 150
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 51.6 bits (118), Expect = 9e-09
Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 2/136 (1%)
Frame = +3
Query: 186 STRSSQRTIGTPPPHSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEW 365
S + +R + ++ +TL + ++ E + A L++ W+D L WN E+
Sbjct: 65 SYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEY 123
Query: 366 -GCSTWLVSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWIKRLDISTPISMXL 539
G ++ +LW+PD+++ N+A G Y V++NGS ++ + + +
Sbjct: 124 GGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYVPPGIFKSTCKIDI 183
Query: 540 DNWPNDMHTCPFXFRS 587
+P D C F S
Sbjct: 184 TWFPFDDQHCDMKFGS 199
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 51.6 bits (118), Expect = 9e-09
Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 2/136 (1%)
Frame = +3
Query: 186 STRSSQRTIGTPPPHSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEW 365
S + +R + ++ +TL + ++ E + A L++ W+D L WN E+
Sbjct: 65 SYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEY 123
Query: 366 -GCSTWLVSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWIKRLDISTPISMXL 539
G ++ +LW+PD+++ N+A G Y V++NGS ++ + + +
Sbjct: 124 GGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYVPPGIFKSTCKIDI 183
Query: 540 DNWPNDMHTCPFXFRS 587
+P D C F S
Sbjct: 184 TWFPFDDQHCDMKFGS 199
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 50.8 bits (116), Expect = 2e-08
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Frame = +3
Query: 273 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 446
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 447 GDYALRARVSNNGSVSWIKRLDISTPISMXLDNWPNDMHTCPFXFRS 587
G Y V++NGS ++ + + + +P D C F S
Sbjct: 85 GTYQTSVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCDMKFGS 131
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 50.8 bits (116), Expect = 2e-08
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 3/121 (2%)
Frame = +3
Query: 234 KIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWR 407
++ + L L L N++ T + ++ +W D +L W E+G L V S+ +WR
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 408 PDVVLL-NAAATTAGDYALRARVSNNGSVSWIKRLDISTPISMXLDNWPNDMHTCPFXFR 584
PD+VL NA A +A + + G V W + + ++ +P D TC F
Sbjct: 113 PDIVLYNNADGNFEVTLATKATIYHQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFG 172
Query: 585 S 587
S
Sbjct: 173 S 173
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 50.8 bits (116), Expect = 2e-08
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Frame = +3
Query: 315 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGS 488
++ +W D +L W+ E+G L V S+ +WRPD+VL NA A +A ++ G
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGR 136
Query: 489 VSWIKRLDISTPISMXLDNWPNDMHTCPFXFRS 587
V W + + ++ +P D TC F S
Sbjct: 137 VEWKPPAIYKSSCEIDVEYFPFDEQTCVMKFGS 169
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 50.0 bits (114), Expect = 3e-08
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Frame = +3
Query: 273 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 446
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 447 GDYALRARVSNNGSVSWIKRLDISTPISMXLDNWPNDMHTCPFXFRS 587
G Y V+++GS ++ + M + +P D C F S
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKMDIAWFPFDDQHCDMKFGS 131
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 49.6 bits (113), Expect = 4e-08
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Frame = +3
Query: 273 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 446
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 447 GDYALRARVSNNGSVSWIKRLDISTPISMXLDNWPNDMHTCPFXFRS 587
G Y V+++GS ++ + M + +P D C F S
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKMDVAWFPFDDQHCDMKFGS 131
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 49.2 bits (112), Expect = 5e-08
Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 5/122 (4%)
Frame = +3
Query: 237 IVVNLTLHLRHA---NIRESESTVRIQADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLW 404
+VV L L L N+++ T + L+ W D + W+ E+G T L V SE +W
Sbjct: 46 VVVKLGLRLSQLIDLNLKDQILTTNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIW 103
Query: 405 RPDVVLLNAAATTAGDYAL-RARVSNNGSVSWIKRLDISTPISMXLDNWPNDMHTCPFXF 581
PD+VL N A G + +A + G V W + + + +P D TC F
Sbjct: 104 LPDIVLYNNADGEYGVTTMTKAILHYTGKVLWTPPAIFKSSCEIDVRYFPFDQQTCFMKF 163
Query: 582 RS 587
S
Sbjct: 164 GS 165
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 48.8 bits (111), Expect = 7e-08
Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Frame = +3
Query: 273 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 446
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 447 GDYALRARVSNNGSVSWIKRLDISTPISMXLDNWPNDMHTCPFXFRS 587
G Y V+++GS ++ + + + +P D C F S
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKIDITWFPFDDQHCDMKFGS 131
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 48.8 bits (111), Expect = 7e-08
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 6/118 (5%)
Frame = +3
Query: 234 KIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWR 407
++ + L L L N++ T + ++ +W D +L W E+G L V S+ +WR
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 408 PDVVLLNAAATTAGDYAL----RARVSNNGSVSWIKRLDISTPISMXLDNWPNDMHTC 569
PD+VL N A G+Y + +A V +G V W + S+ ++ +P D+ TC
Sbjct: 113 PDIVLYNNA---DGNYEVTLMTKATVYYSGLVVWQPPAVYKSSCSIDVEFFPYDVQTC 167
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 48.4 bits (110), Expect = 9e-08
Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Frame = +3
Query: 273 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 446
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 447 GDYALRARVSNNGSVSWIKRLDISTPISMXLDNWPNDMHTCPFXFRS 587
G Y V+++GS ++ + + + +P D C F S
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFKSTCKIDIAWFPFDDQHCDMKFGS 131
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 48.4 bits (110), Expect = 9e-08
Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Frame = +3
Query: 273 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 446
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 447 GDYALRARVSNNGSVSWIKRLDISTPISMXLDNWPNDMHTCPFXFRS 587
G Y V+++GS ++ + + + +P D C F S
Sbjct: 85 GTYQTSVVVTHDGSCLYVPPGIFGSTCKIDIAWFPFDDQHCDMKFGS 131
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 48.4 bits (110), Expect = 9e-08
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 6/129 (4%)
Frame = +3
Query: 219 PPPHSKIVVNLTLHL--RHANIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVS 389
P +I N+T+ L + + S + + + + + W D LSW ++ G + V
Sbjct: 61 PISSHQIANNVTMQLLPKLMEFDDWTSVMELHSWMTLMWTDSHLSWKPSDFDGINYIYVK 120
Query: 390 SERLWRPDVVLLNAAATT---AGDYALRARVSNNGSVSWIKRLDISTPISMXLDNWPNDM 560
S+ +W PD+ + N+ T G V ++GSVS + + + +WP D
Sbjct: 121 SDDIWVPDISVYNSGDMTFDQTGIPPTTCLVFSSGSVSCVPSVKHVAKCATDFSSWPYDT 180
Query: 561 HTCPFXFRS 587
H C F S
Sbjct: 181 HRCRINFGS 189
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 48.4 bits (110), Expect = 9e-08
Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 3/120 (2%)
Frame = +3
Query: 237 IVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPD 413
+V L+LH ++ E + + W D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 414 VVLLNAAATTAGDYALRAR--VSNNGSVSWIKRLDISTPISMXLDNWPNDMHTCPFXFRS 587
+L N A + VS+ G V W+ + + ++ +P D C + S
Sbjct: 92 TILYNNADPQYSSAVINTNVIVSHTGEVVWLSHGIFRSSCDIDVEFFPFDEQRCVLKWAS 151
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 48.0 bits (109), Expect = 1e-07
Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 2/131 (1%)
Frame = +3
Query: 201 QRTIGTPPPHSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEWGCSTW 380
+R +G + LTL ++ ++ E + L++ W D + WN ++G
Sbjct: 39 ERPVGNESEPLVLSFGLTL-MQIIDVDEKNQLLITNLWLKLEWNDVNMRWNVSDYGGVRD 97
Query: 381 L-VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWIKRLDISTPISMXLDNWPN 554
L + RLW+PDV++ N+A G Y V NNG+ ++ + + + +P
Sbjct: 98 LRIPPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNGTCLYVPPGIFKSTCKIDITWFPF 157
Query: 555 DMHTCPFXFRS 587
D C F S
Sbjct: 158 DDQRCEMKFGS 168
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 48.0 bits (109), Expect = 1e-07
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Frame = +3
Query: 315 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTAGDYAL----RARVSN 479
++ W D +L WN E+G L V SE +W PD+VL N A G+Y + +A +
Sbjct: 86 VEQRWNDYKLKWNPEEYGGVEMLYVPSENIWLPDIVLYNNA---DGNYEVTLMTKATLKY 142
Query: 480 NGSVSWIKRLDISTPISMXLDNWPNDMHTCPFXFRS 587
G VSW + + ++ +P D +C F S
Sbjct: 143 TGDVSWKPPAIYKSSCEINVEYFPFDEQSCIMKFGS 178
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 47.6 bits (108), Expect = 2e-07
Identities = 34/129 (26%), Positives = 52/129 (40%), Gaps = 7/129 (5%)
Frame = +3
Query: 222 PPHSK---IVVNLTLHLRHAN-IRESESTVRIQADLQMNWIDKRLSWNAGEWGCSTWLVS 389
P H K VV + +R + E + + + +W D RLS+ S +
Sbjct: 54 PTHGKGTPTVVKTNILIRSMGPVSELDMDYSMDCYFRQSWRDSRLSFLGPIKSLSLSIKM 113
Query: 390 SERLWRPDVVLLNAAATTAGDYALR---ARVSNNGSVSWIKRLDISTPISMXLDNWPNDM 560
ER+WRPD N + + R+S +G + + RL I M L N+P D
Sbjct: 114 LERIWRPDTYFYNGKHSYVHTITVPNKLLRISQDGDILYSMRLTIKAKCPMELRNFPMDR 173
Query: 561 HTCPFXFRS 587
+CP S
Sbjct: 174 QSCPLILGS 182
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 46.8 bits (106), Expect = 3e-07
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 6/134 (4%)
Frame = +3
Query: 204 RTIGTPPPHSKIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEWG-CST 377
R +G + + L L L N++ T + ++ W D +L WN ++G T
Sbjct: 37 RPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVW--VEQEWNDYKLKWNPDDYGGVDT 94
Query: 378 WLVSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSWIKRLDISTPISMXLDN 545
V SE +W PD+VL N A G+Y + +A + + G V W + + ++
Sbjct: 95 LHVPSEHIWLPDIVLYNNA---DGNYEVTIMTKAILHHTGKVVWKPPAIYKSFCEIDVEY 151
Query: 546 WPNDMHTCPFXFRS 587
+P D TC F S
Sbjct: 152 FPFDEQTCFMKFGS 165
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 41.1 bits (92), Expect = 1e-05
Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 3/126 (2%)
Frame = +3
Query: 219 PPPHSKIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSE 395
P + ++ L ++H N+ E TV L++ W L+W + E+ ++ V S
Sbjct: 54 PEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLKLMWEQSHLTWKSSEFDSINSIRVKSY 113
Query: 396 RLWRPDVVL--LNAAATTAGDYALRARVSNNGSVSWIKRLDISTPISMXLDNWPNDMHTC 569
+W PD+V+ + + ++ V N+G++ + + WP D+ C
Sbjct: 114 EIWVPDIVMHSVTSVGIDLEMPSVECIVFNSGTILCVPFTTYTPVCEYDHTWWPYDILNC 173
Query: 570 PFXFRS 587
S
Sbjct: 174 TIHIAS 179
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 39.9 bits (89), Expect = 3e-05
Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 6/132 (4%)
Frame = +3
Query: 240 VVNLTLHLRH-ANIRESESTVRIQADLQMNWIDKRLSWN--AGEWGCSTWLVSSERLWRP 410
+V + L +R A I + + +Q + W+D+RL +N G T L + R+W P
Sbjct: 60 IVRVNLFVRSIATISDIKMEYSVQLTFREQWLDERLRFNDFGGRLKYLT-LTDASRVWMP 118
Query: 411 DVVLLNAAATTAGDYAL---RARVSNNGSVSWIKRLDISTPISMXLDNWPNDMHTCPFXF 581
D+ N + + R+ NGSV + R+ ++ M L +P D C
Sbjct: 119 DLFFSNEKEGHFHNIIMPNVYIRIFPNGSVLYSIRISLTLSCPMNLKLYPLDRQVCSLRM 178
Query: 582 RSRMXXSDXXDF 617
S +D F
Sbjct: 179 ASYGWTTDDLVF 190
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 38.3 bits (85), Expect = 9e-05
Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 4/138 (2%)
Frame = +3
Query: 186 STRSSQRTIGTPPPHSKIVVNLT-LHLRHANIRESESTVRIQADLQMNWIDKRLSW-NAG 359
STR +R + PP + VN++ L L A+ ES ++ LQ W D RL + N
Sbjct: 71 STRYDKRLL--PPVQGTLTVNVSVLLLSLASPDESSLKYEVEFLLQQQWYDPRLRYSNRS 128
Query: 360 EWGCSTWLVSSERLWRPDV--VLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPISM 533
++ + + +W PD ++ R+ NG+V+++ R +
Sbjct: 129 QYEFLNAIHHYDDIWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLILSCQG 188
Query: 534 XLDNWPNDMHTCPFXFRS 587
L+ +P D C F S
Sbjct: 189 RLNIFPFDDPLCSFAIES 206
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 38.3 bits (85), Expect = 9e-05
Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 4/138 (2%)
Frame = +3
Query: 186 STRSSQRTIGTPPPHSKIVVNLT-LHLRHANIRESESTVRIQADLQMNWIDKRLSW-NAG 359
STR +R + PP + VN++ L L A+ ES ++ LQ W D RL + N
Sbjct: 71 STRYDKRLL--PPVQGTLTVNVSVLLLSLASPDESSLKYEVEFLLQQQWYDPRLRYSNRS 128
Query: 360 EWGCSTWLVSSERLWRPDV--VLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPISM 533
++ + + +W PD ++ R+ NG+V+++ R +
Sbjct: 129 QYEFLNAIHHYDDIWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLILSCQG 188
Query: 534 XLDNWPNDMHTCPFXFRS 587
L+ +P D C F S
Sbjct: 189 RLNIFPFDDPLCSFAIES 206
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 38.3 bits (85), Expect = 9e-05
Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 4/138 (2%)
Frame = +3
Query: 186 STRSSQRTIGTPPPHSKIVVNLT-LHLRHANIRESESTVRIQADLQMNWIDKRLSW-NAG 359
STR +R + PP + VN++ L L A+ ES ++ LQ W D RL + N
Sbjct: 71 STRYDKRLL--PPVQGTLTVNVSVLLLSLASPDESSLKYEVEFLLQQQWYDPRLRYSNRS 128
Query: 360 EWGCSTWLVSSERLWRPDV--VLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPISM 533
++ + + +W PD ++ R+ NG+V+++ R +
Sbjct: 129 QYEFLNAIHHYDDIWLPDTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLILSCQG 188
Query: 534 XLDNWPNDMHTCPFXFRS 587
L+ +P D C F S
Sbjct: 189 RLNIFPFDDPLCSFAIES 206
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 31.5 bits (68), Expect = 0.011
Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 4/121 (3%)
Frame = +3
Query: 237 IVVNLT-LHLRHANIRESESTVRIQADLQMNWIDKRLSW-NAGEWGCSTWLVSSERLWRP 410
+ VN++ L L A+ ES ++ LQ W D RL + N ++ + + +W P
Sbjct: 137 LTVNVSVLLLSLASPDESSLKYEVEFLLQQQWYDPRLRYSNRSQYEFLNAIHHYDDIWLP 196
Query: 411 DV--VLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPISMXLDNWPNDMHTCPFXFR 584
D ++ R+ NG+V+++ R + L+ +P D C F
Sbjct: 197 DTYFIMHGDFKDPLIPVHFALRIYRNGTVNYLMRRHLILSCQGRLNIFPFDDPLCSFAIE 256
Query: 585 S 587
S
Sbjct: 257 S 257
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 30.3 bits (65), Expect = 0.025
Identities = 28/128 (21%), Positives = 52/128 (40%), Gaps = 11/128 (8%)
Frame = +3
Query: 237 IVVNLTLHLRHAN-IRESESTVRIQADLQMNWIDKRLS-----WNAGEWGCSTWLVSSER 398
++V+ + + N I + R+ ++ +WI+ RL + G+ + +
Sbjct: 11 VLVDFNIFVADINSINVEDMDFRVDMFVRQSWIESRLDMPDYIFEEGDDYVTLPPEFFDS 70
Query: 399 LWRPDVVLLNAAATTAGDYALRARVSN-----NGSVSWIKRLDISTPISMXLDNWPNDMH 563
LW+PD LNA + AL + S+ N +V + R+ M +P D+
Sbjct: 71 LWQPDPYFLNAKVSEIA--ALNHKFSSVTLYRNKTVKYSARMHAIIACQMEFQLYPMDIQ 128
Query: 564 TCPFXFRS 587
CP S
Sbjct: 129 ICPIYIES 136
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 24.2 bits (50), Expect = 1.6
Identities = 15/78 (19%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Frame = +3
Query: 393 ERLWRPDVVLLNAAATTAGDYALRAR---VSNNGSVSWIKRLDISTPISMXLDNWPNDMH 563
+ +WRPD NA + T + + + ++ ++ +L + +M +P+D
Sbjct: 116 KNMWRPDSFFKNAKSVTFQTMTIPNHYLWLYKDKTILYMVKLTLKLSCAMNFLIYPHDTQ 175
Query: 564 TCPFXFRSRMXXSDXXDF 617
C S +D F
Sbjct: 176 ECKLQMESLSHTTDEMIF 193
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 22.6 bits (46), Expect = 4.9
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -2
Query: 380 PSAAAPLPCVPTQS 339
PSA AP+P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,063
Number of Sequences: 438
Number of extensions: 4233
Number of successful extensions: 69
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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