Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_F14
(911 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 46 5e-07
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 45 8e-07
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 45 8e-07
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 44 1e-06
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 44 3e-06
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 43 4e-06
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 43 4e-06
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 42 6e-06
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 42 6e-06
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 42 6e-06
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 42 6e-06
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 42 6e-06
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 42 8e-06
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 42 8e-06
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 42 1e-05
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 41 1e-05
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 41 1e-05
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 38 1e-04
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 38 1e-04
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 31 0.019
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 30 0.025
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 29 0.044
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 24 1.7
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 23 5.1
AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor ... 22 6.7
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 8.9
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 46.0 bits (104), Expect = 5e-07
Identities = 33/101 (32%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Frame = +3
Query: 111 CENATSLSLMIDSLLATYDRESPPDSK----IVVNLTLHLRHA---NIRESESTVRILAD 269
C + D LL+ Y+R P S +VV L L L N+++ T +
Sbjct: 15 CHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILTTNVW-- 72
Query: 270 LQMNWIDKRLXWNAGEWGCSTWL-VYSERLWRPDVVLLNAA 389
L+ W D + W+ E+G T L V SE +W PD+VL N A
Sbjct: 73 LEHEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVLYNNA 113
Score = 23.8 bits (49), Expect = 2.2
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 502 WPNDMQTCTFKFGS 543
+P D QTC KFGS
Sbjct: 152 FPFDQQTCFMKFGS 165
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 45.2 bits (102), Expect = 8e-07
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Frame = +3
Query: 138 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLX 302
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 303 WNAGEW-GCSTWLVYSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 443
WN E+ G + +LW+PD+++ N+A G Y V++NGS
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGS 166
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 45.2 bits (102), Expect = 8e-07
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Frame = +3
Query: 138 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLX 302
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 303 WNAGEW-GCSTWLVYSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 443
WN E+ G + +LW+PD+++ N+A G Y V++NGS
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGS 166
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 44.4 bits (100), Expect = 1e-06
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +3
Query: 228 NIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVYSERLWRPDVVLLNAA-ATTA 401
++ E + A L++ W+D L WN E+ G + +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 402 GDYALRARVSNNGS 443
G Y V++NGS
Sbjct: 85 GTYQTSVVVTHNGS 98
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 43.6 bits (98), Expect = 3e-06
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Frame = +3
Query: 111 CENATSLSLMIDS---LLATYDRESPPDSKIV--VNLTLHLRHANIRESESTVRILADLQ 275
C++ TS S + L YDR+ P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 276 MNWIDKRLXWNAGEW-GCSTWLVYSERLWRPDVVL 377
+ W L W + E+ ++ V S +W PD+V+
Sbjct: 88 LMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIVM 122
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 42.7 bits (96), Expect = 4e-06
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Frame = +3
Query: 111 CENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLR-------HANIRESESTVRILAD 269
C + D LL+ Y++ P + LT+ ++ N++ T +
Sbjct: 19 CSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLW-- 76
Query: 270 LQMNWIDKRLXWNAGEWGCSTWL-VYSERLWRPDVVLLNAA 389
++ +W D +L W+ E+G L V S+ +WRPD+VL N A
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYNNA 117
Score = 24.6 bits (51), Expect = 1.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 493 LDNWPNDMQTCTFKFGSXMPIVTEMDFR 576
++ +P D QTC KFGS ++D R
Sbjct: 153 VEYFPFDEQTCVMKFGSWTYDGFQVDLR 180
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 42.7 bits (96), Expect = 4e-06
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Frame = +3
Query: 138 MIDSLLATYDRESPP----DSKIVVNLTLHLRH---ANIRESESTVRILADLQMNWIDKR 296
+ D LL+ Y+R P ++ V + L L N++ T + ++ W D +
Sbjct: 24 LYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVW--VEQEWNDYK 81
Query: 297 LXWNAGEWG-CSTWLVYSERLWRPDVVLLNAA 389
L WN ++G T V SE +W PD+VL N A
Sbjct: 82 LKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNA 113
Score = 23.4 bits (48), Expect = 2.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 493 LDNWPNDMQTCTFKFGS 543
++ +P D QTC KFGS
Sbjct: 149 VEYFPFDEQTCFMKFGS 165
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 42.3 bits (95), Expect = 6e-06
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +3
Query: 228 NIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVYSERLWRPDVVLLNAA-ATTA 401
++ E + A L++ W+D L WN E+ G + +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 402 GDYALRARVSNNGS 443
G Y V+++GS
Sbjct: 85 GTYQTSVVVTHDGS 98
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 42.3 bits (95), Expect = 6e-06
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +3
Query: 228 NIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVYSERLWRPDVVLLNAA-ATTA 401
++ E + A L++ W+D L WN E+ G + +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 402 GDYALRARVSNNGS 443
G Y V+++GS
Sbjct: 85 GTYQTSVVVTHDGS 98
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 42.3 bits (95), Expect = 6e-06
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +3
Query: 228 NIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVYSERLWRPDVVLLNAA-ATTA 401
++ E + A L++ W+D L WN E+ G + +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 402 GDYALRARVSNNGS 443
G Y V+++GS
Sbjct: 85 GTYQTSVVVTHDGS 98
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 42.3 bits (95), Expect = 6e-06
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +3
Query: 228 NIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVYSERLWRPDVVLLNAA-ATTA 401
++ E + A L++ W+D L WN E+ G + +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 402 GDYALRARVSNNGS 443
G Y V+++GS
Sbjct: 85 GTYQTSVVVTHDGS 98
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 42.3 bits (95), Expect = 6e-06
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +3
Query: 228 NIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVYSERLWRPDVVLLNAA-ATTA 401
++ E + A L++ W+D L WN E+ G + +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 402 GDYALRARVSNNGS 443
G Y V+++GS
Sbjct: 85 GTYQTSVVVTHDGS 98
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 41.9 bits (94), Expect = 8e-06
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Frame = +3
Query: 117 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLHLRHAN-IRESESTVRILADLQMNW 284
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 285 IDKRLXWNAGEWGCSTWLVYSERLWRPDVVLLN 383
+D+RL + G+ + + R+W+PD N
Sbjct: 62 VDRRLAFQGGKETLALSISMLARIWKPDTYFYN 94
Score = 28.3 bits (60), Expect = 0.10
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 460 RLDXXTPISMHLDNWPNDMQTCTFKFGS 543
RL M+L+N+P D Q C +FGS
Sbjct: 123 RLTIKAGCPMNLENFPMDTQRCPLQFGS 150
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 41.9 bits (94), Expect = 8e-06
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Frame = +3
Query: 138 MIDSLLATYDRESPPDSKIVVNLT--LHLRHANIRESESTVRILAD---LQMNWIDKRLX 302
+ D LL+ Y+R P LT L L+ + + E +++ ++ W D +L
Sbjct: 37 LYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVWVEQRWNDYKLK 96
Query: 303 WNAGEWGCSTWL-VYSERLWRPDVVLLNAA 389
WN E+G L V SE +W PD+VL N A
Sbjct: 97 WNPEEYGGVEMLYVPSENIWLPDIVLYNNA 126
Score = 23.0 bits (47), Expect = 3.9
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +1
Query: 487 MHLDNWPNDMQTCTFKFGS 543
++++ +P D Q+C KFGS
Sbjct: 160 INVEYFPFDEQSCIMKFGS 178
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 41.5 bits (93), Expect = 1e-05
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +3
Query: 270 LQMNWIDKRLXWNAGEWGCSTWL-VYSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 443
L++ W D + WN ++G L + RLW+PDV++ N+A G Y V NNG+
Sbjct: 76 LKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNGT 135
Score = 21.8 bits (44), Expect = 8.9
Identities = 8/22 (36%), Positives = 11/22 (50%)
Frame = +3
Query: 453 HKALGHXHSNFYALRQLAQRHA 518
H +GH HS+ +A HA
Sbjct: 416 HHTMGHGHSHIHATPHHHHSHA 437
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 41.1 bits (92), Expect = 1e-05
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Frame = +3
Query: 138 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLX 302
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 303 WNAGEWGCSTWL-VYSERLWRPDVVLLNAA 389
W E+G L V S+ +WRPD+VL N A
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYNNA 121
Score = 24.6 bits (51), Expect = 1.3
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 484 SMHLDNWPNDMQTCTFKFGS 543
S+ ++ +P D+QTC K GS
Sbjct: 154 SIDVEFFPYDVQTCVLKLGS 173
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 41.1 bits (92), Expect = 1e-05
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Frame = +3
Query: 138 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLX 302
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 303 WNAGEWGCSTWL-VYSERLWRPDVVLLNAA 389
W E+G L V S+ +WRPD+VL N A
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYNNA 121
Score = 24.2 bits (50), Expect = 1.7
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 493 LDNWPNDMQTCTFKFGS 543
++ +P D QTC KFGS
Sbjct: 157 VEYFPFDEQTCVLKFGS 173
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 37.9 bits (84), Expect = 1e-04
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Frame = +3
Query: 189 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLXWNAGEWG-CSTWLVYSERLWR 362
K+ VN L ++ N+ E ++ L+ W D +L W+ ++G + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 363 PDVVLLNAAATTAGDYALR 419
PD+VL N A G+Y +R
Sbjct: 111 PDIVLFNNA---DGNYEVR 126
Score = 24.2 bits (50), Expect = 1.7
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 502 WPNDMQTCTFKFGS 543
+P D QTC KFGS
Sbjct: 158 FPFDQQTCIMKFGS 171
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 37.9 bits (84), Expect = 1e-04
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +3
Query: 192 IVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLXWNAGEW-GCSTWLVYSERLWRPD 368
+V L+LH ++ E + + W D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 369 VVLLNAA 389
+L N A
Sbjct: 92 TILYNNA 98
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 30.7 bits (66), Expect = 0.019
Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 13/124 (10%)
Frame = +3
Query: 117 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 284
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFW 67
Query: 285 IDKRLXWNAGEWGCSTWLVYSE---RLWRPDVVLLNA------AATTAGDYALRARVSNN 437
D RL + G T V SE +W PD +N ATT+ ++ R+ ++
Sbjct: 68 TDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEF---IRIHHS 123
Query: 438 GSVS 449
GS++
Sbjct: 124 GSIT 127
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 30.3 bits (65), Expect = 0.025
Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Frame = +3
Query: 126 SLSLMIDSLLATYDRESPPD----SKIVVNLTLHLRHAN-IRESESTVRILADLQMNWID 290
++++++++LL Y+ P + VV + +R + E + + + +W D
Sbjct: 36 NITMVLENLLMNYENNQLPTHGKGTPTVVKTNILIRSMGPVSELDMDYSMDCYFRQSWRD 95
Query: 291 KRLXWNAGEWGCSTWLVYSERLWRPDVVLLN 383
RL + S + ER+WRPD N
Sbjct: 96 SRLSFLGPIKSLSLSIKMLERIWRPDTYFYN 126
Score = 23.4 bits (48), Expect = 2.9
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +1
Query: 460 RLDXXTPISMHLDNWPNDMQTCTFKFGS 543
RL M L N+P D Q+C GS
Sbjct: 155 RLTIKAKCPMELRNFPMDRQSCPLILGS 182
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 29.5 bits (63), Expect = 0.044
Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 13/124 (10%)
Frame = +3
Query: 117 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 284
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDFTLDFYFRQFW 67
Query: 285 IDKRLXWNAGEWGCSTWLVYSE---RLWRPDVVLLNA------AATTAGDYALRARVSNN 437
D RL + G T V SE +W PD +N ATT+ ++ R+ ++
Sbjct: 68 TDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEF---IRIHHS 123
Query: 438 GSVS 449
GS++
Sbjct: 124 GSIT 127
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 24.2 bits (50), Expect = 1.7
Identities = 8/31 (25%), Positives = 12/31 (38%)
Frame = +1
Query: 451 CIKRLDXXTPISMHLDNWPNDMQTCTFKFGS 543
C+ + + +WP D C FGS
Sbjct: 159 CVPSVKHVAKCATDFSSWPYDTHRCRINFGS 189
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 22.6 bits (46), Expect = 5.1
Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Frame = +3
Query: 192 IVVNLTLHLRHAN-IRESESTVRILADLQMNWIDKRLX-----WNAGEWGCSTWLVYSER 353
++V+ + + N I + R+ ++ +WI+ RL + G+ + + +
Sbjct: 11 VLVDFNIFVADINSINVEDMDFRVDMFVRQSWIESRLDMPDYIFEEGDDYVTLPPEFFDS 70
Query: 354 LWRPDVVLLNA 386
LW+PD LNA
Sbjct: 71 LWQPDPYFLNA 81
>AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor A
isoform protein.
Length = 567
Score = 22.2 bits (45), Expect = 6.7
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Frame = -2
Query: 796 PAXPTGXXXXXAXXGXXXPGGXSPGKGXS-XEXW-PXGXFPLGXRSGXXAP 650
P+ P G G PG + GKG + + W P+G S P
Sbjct: 55 PSVPVGSAVAGTAGGALFPGMAAAGKGAARSDDWLANANSPVGSPSAALQP 105
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.8 bits (44), Expect = 8.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 368 VRPPQAFRVHQPSAAAPFPCVPXQS 294
VR P ++ PSA AP P +P S
Sbjct: 401 VRSPAGGQL-PPSAGAPMPPIPNMS 424
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,889
Number of Sequences: 438
Number of extensions: 4197
Number of successful extensions: 58
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -