Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_F13
(882 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 213 4e-56
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 207 2e-54
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 36 0.010
SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom... 27 4.7
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 26 6.2
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 26 8.2
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 26 8.2
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 213 bits (519), Expect = 4e-56
Identities = 102/167 (61%), Positives = 122/167 (73%)
Frame = +2
Query: 122 TVLALNEEDVTKMLAATTHLGAENVNFXMETYVYKRRADGTHVINLRRTWEKXXXXXXXX 301
+VL ++D+ +LAA +H+G++N+ ME YV+KRR+DG H+INL +TWEK
Sbjct: 9 SVLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVI 68
Query: 302 XXIXNPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQXAFREPRLLIVL 481
I NPADV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+IV
Sbjct: 69 ATIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVT 128
Query: 482 DPAQDHQPITEASYVNIPVIALCNTDSPLXFVDIAIPCNTKSSHSIG 622
DP D Q I EAS+VNIPVIALC+TDS L VD+AIP N K SIG
Sbjct: 129 DPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIG 175
Score = 33.5 bits (73), Expect = 0.041
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +1
Query: 643 AREVLXLXGVLXR*PALGCCG*FVFYRDPEXSEKDEQQ 756
AREVL L G + R A FYRDPE E++E+Q
Sbjct: 182 AREVLRLRGNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 207 bits (505), Expect = 2e-54
Identities = 97/166 (58%), Positives = 120/166 (72%)
Frame = +2
Query: 125 VLALNEEDVTKMLAATTHLGAENVNFXMETYVYKRRADGTHVINLRRTWEKXXXXXXXXX 304
+L +ED+ ++LAA H+G++N+ M+ YV+KRR+DG H++NL +TWEK
Sbjct: 9 ILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAARVIA 68
Query: 305 XIXNPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQXAFREPRLLIVLD 484
I NPADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL++V D
Sbjct: 69 TIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTD 128
Query: 485 PAQDHQPITEASYVNIPVIALCNTDSPLXFVDIAIPCNTKSSHSIG 622
P D Q I EAS+VNIPVIALC+TDS L VDIAIP N K SIG
Sbjct: 129 PRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIG 174
Score = 30.7 bits (66), Expect = 0.29
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +1
Query: 643 AREVLXLXGVLXR*PALGCCG*FVFYRDPEXSEKDEQ 753
AREVL + G L R FYRDPE E++E+
Sbjct: 181 AREVLRVRGTLSRSAPWDVMPDLYFYRDPEEVEREEE 217
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 35.5 bits (78), Expect = 0.010
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +2
Query: 461 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLXFVDIAIPCNTKS 607
P L+++L+P ++ EA ++P I + +TD+ V IP N S
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDS 228
>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = -1
Query: 633 TTSNPIEWEDLVLHGIAMSTNXSGESVLHKAITGMLTYEASVMG 502
T + PIE+E++ + G+ + SG++ LH+AI + + + G
Sbjct: 45 TANVPIEFEEIDVTGMEKNNKSSGDA-LHEAIQSLKRNKVGLKG 87
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 26.2 bits (55), Expect = 6.2
Identities = 22/69 (31%), Positives = 31/69 (44%)
Frame = -3
Query: 511 SNGLMVLCRVQYNQETRFTECXLDLVSKSTWCETSRNRRSTGVRGKLQYSTLTEGP**DD 332
S GL L R + E F + +S + W T + + G+RG ++ EGP D
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP-SAD 225
Query: 331 EHISGVXDG 305
H SGV G
Sbjct: 226 LH-SGVFGG 233
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 25.8 bits (54), Expect = 8.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 135 STRKMSPKCLLQPHILGQK 191
S R P+CL QPH++G +
Sbjct: 252 SERYECPECLFQPHLVGSE 270
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 25.8 bits (54), Expect = 8.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 509 TEASYVNIPVIALCNTDSPLXFVDIAIPCNTKSSHSI 619
T A + + LC+ +S F D+A+ NTK +H I
Sbjct: 75 TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,526,371
Number of Sequences: 5004
Number of extensions: 68600
Number of successful extensions: 129
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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