Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_F11
         (841 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    28   1.9  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.5  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   3.3  
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    27   4.4  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    27   4.4  
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   7.6  
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce...    26   7.6  

>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 28/76 (36%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
 Frame = +2

Query: 533 TGTETKSNSVTV-QSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTA 703
           TG       +T+ QSL N+S  S I   R     N  A  FPS  S  +P  VDL     
Sbjct: 308 TGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQM 366

Query: 704 DVTVEGVNVLXTPSSS 751
           DV+ E    L TP  S
Sbjct: 367 DVSDEEQRFLSTPLGS 382


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/38 (31%), Positives = 15/38 (39%)
 Frame = +2

Query: 74  RPQNRRSARTSLSDNAFPRFLLAYHAPFMLFWIGPPAY 187
           R    R       D  FP F  ++  P  LFW+G   Y
Sbjct: 403 RRYEMRDGNICPEDRLFPLFFGSFFIPIALFWLGWTCY 440


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 515  RLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD-AYLVN 628
            R+Y  L  T   ++S    + PN S + +GY + A+L+N
Sbjct: 2840 RVYLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLIN 2878


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 3   LVK*FTRARFLISFAVNVPRQQKLALKIGE 92
           L+K    A   I FAVN P Q+ LA+  GE
Sbjct: 267 LIKYSAAAHTRICFAVNSPCQEALAIAFGE 296


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/30 (53%), Positives = 21/30 (70%)
 Frame = +2

Query: 596 IKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 685
           +K  RD YL NLEA  FPS+  +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404


>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = +2

Query: 74  RPQNRRSARTSLSDNAFPRFLLAYHAPFMLFWIGPPAYVY 193
           R   RR+   S  D  +P F  +   P  +FW     Y Y
Sbjct: 394 RVYTRRNGVMSPEDRLYPLFFGSIMLPISMFWFAWTCYPY 433


>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 357

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 356 GVWKKRKH*PRREWPKRQKRXKAQF 282
           G WKK +   + EW K ++  KA++
Sbjct: 119 GEWKKAREEDKAEWKKAREEDKAEW 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,200,568
Number of Sequences: 5004
Number of extensions: 61271
Number of successful extensions: 192
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)