Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_F08
         (860 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68320-2|CAA92706.1|  502|Caenorhabditis elegans Hypothetical pr...    29   5.6  
Z49127-5|CAA88945.1|  421|Caenorhabditis elegans Hypothetical pr...    28   9.8  

>Z68320-2|CAA92706.1|  502|Caenorhabditis elegans Hypothetical
           protein W07A12.7 protein.
          Length = 502

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
 Frame = -1

Query: 353 DRAKRSPTYGTPXMSPYNARLESSSNRVFFPR*FSQARS-LGCGFAR**IGTVGISLIHS 177
           +R      Y +P  S  N+ L S     F P     A S L        IGT+    + S
Sbjct: 14  ERLSEVRLYSSPMTSVLNSNLSSCLTNAFIPDTVRMASSPLLAWMTLVVIGTLAPVSVFS 73

Query: 176 CASLIR*ARHLATLRES 126
           C SL R  + L T R S
Sbjct: 74  CLSLKRSVKELLTERSS 90


>Z49127-5|CAA88945.1|  421|Caenorhabditis elegans Hypothetical
           protein F13D12.5 protein.
          Length = 421

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +1

Query: 124 YDSLKVAKCLAHLISDAHEWINEIPTVPIYY 216
           +D L +AK   H ++   +W+ +  T  +YY
Sbjct: 181 FDKLHIAKYTGHAVNGLFDWVEDPYTDAVYY 211


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,262,994
Number of Sequences: 27780
Number of extensions: 325476
Number of successful extensions: 769
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)