Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_F07
         (823 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    30   0.35 
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    27   4.3  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   7.4  
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    25   9.8  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +1

Query: 244 VRVHRANTGRSSNELDRQTTELERR 318
           +R H+ + GR+  ELDR+ T+L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = +1

Query: 403 PPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARFKFGSTMHNSDXMGF 579
           P G +    V+L+++ SP  S+   A+ F     +    C+L +     T  N   MGF
Sbjct: 770 PYGESKDFEVFLLSSKSPDVSS--KAISFFYDVQLAYENCKLGKLNLSETSINERVMGF 826


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 375 RQASTSVPRTPAKCCSPTRPAFQLSRLSI 289
           RQ+S+S   TP+   S  + +F LS LSI
Sbjct: 764 RQSSSSSSFTPSSAISTAKSSFVLSTLSI 792


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -1

Query: 247 GLTNVSMSQMQGQVDYDFGVGGGVPIV--RCEERVDHE 140
           G ++ S+S ++ ++DY      G+P+V  +  E VD E
Sbjct: 11  GKSDTSVSSLECEIDYHIEGSDGIPVVEPKISEFVDME 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,639,425
Number of Sequences: 5004
Number of extensions: 49364
Number of successful extensions: 136
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)