Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_F07
(823 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0959 + 29692740-29693035,29693102-29693267,29693433-296936... 31 0.84
04_01_0159 - 1824343-1824405,1824485-1824595,1825282-1825448,182... 31 1.5
03_02_0111 + 5688649-5688942 30 2.6
07_01_0284 - 2082249-2082256,2082496-2083009 29 5.9
08_02_0813 + 21459776-21461128 28 7.8
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 7.8
02_01_0054 - 404464-405152,406087-406618 28 7.8
01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892 28 7.8
>04_04_0959 +
29692740-29693035,29693102-29693267,29693433-29693612,
29693703-29693771,29693888-29694088,29694187-29694240,
29694325-29694386,29694488-29694620,29694789-29694899,
29695008-29695104,29695638-29695714,29696129-29696194,
29696431-29696583,29697392-29697447,29697524-29697584,
29697656-29697766,29698010-29698144,29698217-29698447,
29699001-29699075,29699161-29699282,29699381-29699453,
29699538-29699642,29699728-29699895,29700079-29700148,
29700224-29700375,29700574-29700651,29700744-29700836,
29700961-29701098,29701237-29701276,29701350-29701423,
29701777-29701911,29702345-29702464,29702778-29702939
Length = 1287
Score = 31.5 bits (68), Expect = 0.84
Identities = 23/81 (28%), Positives = 32/81 (39%)
Frame = +1
Query: 103 SCGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPAFETC*HS*VRVHRANTGRSSN 282
+CG V H L V LP R + A C + +R HR ++ RS
Sbjct: 19 ACGLAAVAAGQVRHSPLLRAPVPGLLPERQAPEGRRPLAASRCLPTCLRRHRRSSRRSHR 78
Query: 283 ELDRQTTELERRASGAAALGW 345
R++ L RR+ LGW
Sbjct: 79 RCRRRSPRLWRRSGSGFLLGW 99
>04_01_0159 -
1824343-1824405,1824485-1824595,1825282-1825448,
1825853-1826029,1826404-1826656
Length = 256
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -3
Query: 431 TGAESVVPGGGCSRV*QYHVRPPQAFRGHQPSAAAPLALRSNSVVCRSNS 282
T + S GGCS + PP AFRG+ + P+ + V CR+ S
Sbjct: 59 TASASASASGGCSPAPPWAPSPP-AFRGNVKARYQPVMFNGSIVYCRTPS 107
>03_02_0111 + 5688649-5688942
Length = 97
Score = 29.9 bits (64), Expect = 2.6
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = +1
Query: 301 TELERRASGAAALGWCPRNACGGLTWYC*TRLQPPPGTTLSAPVYLITAPSPG*SAWT 474
T L A+ AAA G P G + + PPP L+ P+Y + AP SA+T
Sbjct: 28 TALPLTAAAAAATG--PHRRGRGRCYCSASDAPPPPPYVLTTPLYYVNAPPHMGSAYT 83
>07_01_0284 - 2082249-2082256,2082496-2083009
Length = 173
Score = 28.7 bits (61), Expect = 5.9
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = +1
Query: 397 QPPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARFKFGSTMHNSDXMG 576
+PPP + +AP+ I AP AW LQF + I P + RL F FG + + +
Sbjct: 73 EPPPPPSTTAPI--IAAP-----AWAPLLQFAATQQIIPISARL--FVFGVSKKRTTELD 123
Query: 577 FRXLTXQY 600
R +Y
Sbjct: 124 LRRHFKRY 131
>08_02_0813 + 21459776-21461128
Length = 450
Score = 28.3 bits (60), Expect = 7.8
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +3
Query: 315 QGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPISM 494
+G++ C WL + R P LL+ TT R V+ W K+ IS P+S+
Sbjct: 237 RGDYRCPAWLSTDARRLIPR--LLDPNPTT------RISVAQLVETPWFKKTSISRPVSI 288
Query: 495 QL 500
+L
Sbjct: 289 EL 290
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 429 GRGERSPRRWLQPRLAVPRQASTSVPRTP 343
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>02_01_0054 - 404464-405152,406087-406618
Length = 406
Score = 28.3 bits (60), Expect = 7.8
Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Frame = -1
Query: 352 EDTSQVLQPHSPCVPTQSFVDPIHL-------KICLYSHGGLGLTNVSMSQMQGQVDYDF 194
E S + P V + +VDP L K +YS G L L ++ S G D
Sbjct: 260 EGFSAAVAPTRAAVGSPGYVDPFFLRTGIVSKKSDVYSFGVLLLEAITGSPAAGIPGPDG 319
Query: 193 GVGGGVPIVRCEERVDHEG 137
G GGG R RV EG
Sbjct: 320 GAGGGNLTARLLPRVRTEG 338
>01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892
Length = 291
Score = 28.3 bits (60), Expect = 7.8
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +3
Query: 312 TQGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPIS 491
T G CS++L R+W +++ + LRA +N S + +D+STP +
Sbjct: 131 TVGRSFCSSFLA---RIWNNTTPIVDTGLSPGYAALLRALCPSNASATATTAIDVSTPAT 187
Query: 492 MQLDN 506
LDN
Sbjct: 188 --LDN 190
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,576,295
Number of Sequences: 37544
Number of extensions: 425937
Number of successful extensions: 1251
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1251
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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