Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_F06
         (853 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   254   5e-68
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   254   5e-68
06_03_0543 + 21967787-21970261                                         29   4.7  
09_06_0103 + 20873310-20873382,20873530-20873735                       29   6.2  
01_05_0535 - 23001864-23005052                                         29   6.2  

>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  254 bits (623), Expect = 5e-68
 Identities = 119/208 (57%), Positives = 150/208 (72%), Gaps = 1/208 (0%)
 Frame = +1

Query: 91  STRKMSPKCLLQPPI-LRAENVNFXMETYVYKRRADGTHVINLRRTWEKLVLAARAVVXI 267
           S R+   + +L   + L  +N +F ME YVYKRR DG ++INL +TWEKL LAAR +V I
Sbjct: 13  SQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAI 72

Query: 268 ENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPA 447
           ENP D+ V S+RP+GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP 
Sbjct: 73  ENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPR 132

Query: 448 QDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGV 627
            DHQPI E++  NIP IA C+TDSP+R+VDI IP N K   SIG ++WLLAR VL++RG 
Sbjct: 133 TDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGT 192

Query: 628 LPRDQRWDVVVDLFFYRDLNKVKRMNNK 711
           +    +WDV+VDLFFYRD  + K    +
Sbjct: 193 ILPGHKWDVMVDLFFYRDPEEAKEQEEE 220


>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  254 bits (623), Expect = 5e-68
 Identities = 116/192 (60%), Positives = 145/192 (75%)
 Frame = +1

Query: 136 LRAENVNFXMETYVYKRRADGTHVINLRRTWEKLVLAARAVVXIENPADVFVISSRPFGQ 315
           L  +N +F ME YVYKRR+DG ++INL +TWEKL LAAR +V IENP D+ V S+RP+GQ
Sbjct: 29  LGTKNCDFQMERYVYKRRSDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQ 88

Query: 316 RAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPV 495
           RAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP  DHQPI E++  NIP 
Sbjct: 89  RAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPT 148

Query: 496 IALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFY 675
           IA C+TDSP+R+VDI IP N K  +SIG ++WLLAR VL++RG +    +WDV+VDLFFY
Sbjct: 149 IAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFY 208

Query: 676 RDLNKVKRMNNK 711
           RD  + K    +
Sbjct: 209 RDPEEAKEQEEE 220



 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 51  ISATMSGGLXVLALNEEDVTKMLAATTHLAGRKC 152
           ++A   G    L+  E+DV  MLAA  HL  + C
Sbjct: 1   MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNC 34


>06_03_0543 + 21967787-21970261
          Length = 824

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
 Frame = +1

Query: 580 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF---FYRDL 684
           L W++L RE  +LRGV P +  ++++ + F    YR+L
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHFRRYTYREL 509


>09_06_0103 + 20873310-20873382,20873530-20873735
          Length = 92

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +3

Query: 330 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 437
           +CR+ RC  YC   G    RC +  DPS     ++ +C+
Sbjct: 45  LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83


>01_05_0535 - 23001864-23005052
          Length = 1062

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
 Frame = +1

Query: 529 FVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYR-DLNKV---- 693
           FV +   C+       GL ++    E++   G+LPR + +  V+DL     +L+K+    
Sbjct: 792 FVSVLSACSHAGLVERGLDYF----ELMEDYGILPRIEHYSCVIDLLGRAGELDKIQEYM 847

Query: 694 KRMNNKPRNXLW 729
           KRM  KP   +W
Sbjct: 848 KRMPMKPNTLIW 859


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,277,052
Number of Sequences: 37544
Number of extensions: 578720
Number of successful extensions: 1524
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1524
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)