Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_F06
         (853 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    25   0.67 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    25   0.67 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      24   1.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   2.0  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   6.2  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   8.2  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.4 bits (53), Expect = 0.67
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 656 TTSQRWSRGSTPRSLNTSRANNHHIKP 576
           T +Q WSRG+T  SL+ S  +   + P
Sbjct: 18  TQAQHWSRGNTWLSLDNSNMSMSSVGP 44


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.4 bits (53), Expect = 0.67
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 656 TTSQRWSRGSTPRSLNTSRANNHHIKP 576
           T +Q WSRG+T  SL+ S  +   + P
Sbjct: 18  TQAQHWSRGNTWLSLDNSNMSMSSVGP 44


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +2

Query: 797 LHGLXIPPACCTRCXSC 847
           LHG  +PP  C  C  C
Sbjct: 361 LHGNLLPPGVCYTCDVC 377


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 667 TNQPQHPSAGHGEAHHEASTLH 602
           T  P H + GHG +H  A+  H
Sbjct: 411 TPGPHHHTMGHGHSHIHATPHH 432


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +3

Query: 54  SATMSGGLXVLALNEEDVTKML 119
           S TMS  L  LALN +DV K L
Sbjct: 310 STTMSNALYELALN-QDVQKKL 330


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 6/30 (20%), Positives = 16/30 (53%)
 Frame = +1

Query: 433 VLDPAQDHQPITEASYVNIPVIALCNTDSP 522
           ++DP ++++   E   + IP++   +   P
Sbjct: 167 IVDPVEENETYDEFDTIRIPIVRSLSKSPP 196


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 244,274
Number of Sequences: 438
Number of extensions: 5584
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)