Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_F04
         (855 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical pr...    28   9.7  
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    28   9.7  
AL021488-1|CAB63369.1|  502|Caenorhabditis elegans Hypothetical ...    28   9.7  

>U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical
           protein C12D12.1a protein.
          Length = 769

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 18/63 (28%), Positives = 25/63 (39%)
 Frame = -2

Query: 353 TATSVSATSPLCTLGTKRRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRESGNLVNPFM 174
           T+ +   TSP  T+GT   APA++      P N  S+ T         S  +   V P  
Sbjct: 623 TSPTKLPTSPPSTVGTSPTAPANLTTPTTAPVNPTSSTTAPTAPVNPTSPTTAPTVPPVT 682

Query: 173 RVT 165
             T
Sbjct: 683 TTT 685


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 18/63 (28%), Positives = 25/63 (39%)
 Frame = -2

Query: 353 TATSVSATSPLCTLGTKRRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRESGNLVNPFM 174
           T+ +   TSP  T+GT   APA++      P N  S+ T         S  +   V P  
Sbjct: 679 TSPTKLPTSPPSTVGTSPTAPANLTTPTTAPVNPTSSTTAPTAPVNPTSPTTAPTVPPVT 738

Query: 173 RVT 165
             T
Sbjct: 739 TTT 741


>AL021488-1|CAB63369.1|  502|Caenorhabditis elegans Hypothetical
           protein Y45F10A.2 protein.
          Length = 502

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -3

Query: 421 RCTAPVKLPAWQCPRTGSRGSFKRRRAFPPRHHSARLERNAVR 293
           R ++P    AW   R G  G F + R   P    AR  + AVR
Sbjct: 53  RSSSPTPQSAWAPNRQGFGGQFSKWRTSTPMTTPARYPQQAVR 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,225,614
Number of Sequences: 27780
Number of extensions: 378894
Number of successful extensions: 975
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)