Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_F03
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   297   1e-81
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   297   2e-81
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    33   0.039
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    28   1.5  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    27   3.4  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  297 bits (729), Expect = 1e-81
 Identities = 132/200 (66%), Positives = 166/200 (83%)
 Frame = +3

Query: 63  FQHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 242
           F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPGS
Sbjct: 6   FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65

Query: 243 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYKC 422
           K++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKNW+K 
Sbjct: 66  KMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKS 125

Query: 423 KKKAFTKASXKWQDELGRKSIXKDFXXMIRYCSVVRVIAHTQMKLLKQRQKXAHIMEIQL 602
           KKKAFTK + K+ +    +SI ++   + +YCSVVRV+AHTQ++     QK AH+MEIQ+
Sbjct: 126 KKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQV 183

Query: 603 NGGTIXDKVKWATEHLEKPI 662
           NGG++ DKV+WA EH EK +
Sbjct: 184 NGGSVADKVEWAREHFEKTV 203



 Score = 58.0 bits (134), Expect = 2e-09
 Identities = 26/51 (50%), Positives = 28/51 (54%)
 Frame = +1

Query: 673 SVFAQXEMIDCXXXXXXXXXXXXTSRWHTXXLPRXXHKGLRKVACXGXWHP 825
           S F Q EMID             T+RW T  LPR  H+GLRKVAC G WHP
Sbjct: 207 STFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHP 257


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  297 bits (728), Expect = 2e-81
 Identities = 131/200 (65%), Positives = 166/200 (83%)
 Frame = +3

Query: 63  FQHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 242
           F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPGS
Sbjct: 6   FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65

Query: 243 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYKC 422
           K++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKNW+K 
Sbjct: 66  KMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKS 125

Query: 423 KKKAFTKASXKWQDELGRKSIXKDFXXMIRYCSVVRVIAHTQMKLLKQRQKXAHIMEIQL 602
           KKKAFTK + K+ +    +SI ++   + +YCSVVRV+AHTQ++     QK AH+MEIQ+
Sbjct: 126 KKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQV 183

Query: 603 NGGTIXDKVKWATEHLEKPI 662
           NGG++ DKV+WA EH EK +
Sbjct: 184 NGGSVADKVEWAREHFEKTV 203



 Score = 58.0 bits (134), Expect = 2e-09
 Identities = 26/51 (50%), Positives = 28/51 (54%)
 Frame = +1

Query: 673 SVFAQXEMIDCXXXXXXXXXXXXTSRWHTXXLPRXXHKGLRKVACXGXWHP 825
           S F Q EMID             T+RW T  LPR  H+GLRKVAC G WHP
Sbjct: 207 STFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHP 257


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 33.5 bits (73), Expect = 0.039
 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
 Frame = +3

Query: 9   VESSILVCDCLPACRTENFQHPAHGSMGFYPKKRSRRHRGKVKAFPKDDP-SKPVHLTAF 185
           VE SIL  +  P C      H  + S   +P     +  G  K FP D+P S P+  +  
Sbjct: 280 VEDSILPLELSPGCPFYKIWHIRNTSCQSWPSPLYVKFNGGDKLFPGDNPYSFPITSSVH 339

Query: 186 IGYKAGMTHVVREPDRPGSKI 248
            G     T  ++ P++   +I
Sbjct: 340 PGEDVNFTVALKVPEKSNKEI 360


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -2

Query: 224 FSNHVGHTGLITDKSSQMNRFARVVFRERLDLTTMTTGPLFGIESH-RPMSGVLKIF 57
           F N VG  G+I D S  +   +R+VF    D     +G L  ++SH +P + V  IF
Sbjct: 344 FMNVVGILGMIFDTSLSIVASSRLVFAVARDGVLPFSGWLRKVDSHGQPTNAVTFIF 400


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +3

Query: 51  RTENFQHPAH--GSMGFYPKKRSRRHRGKVKAFPKDDPSKPV 170
           ++E  QHP     +M FY + +     G    FP++   KP+
Sbjct: 186 KSEQVQHPQAVLDAMAFYSQSKKYLEEGAKPPFPRESTEKPL 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,318,614
Number of Sequences: 5004
Number of extensions: 64351
Number of successful extensions: 145
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)