Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_FL5_F03
(861 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 287 1e-77
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 284 7e-77
01_06_0083 + 26283492-26283756,26284255-26284467,26284620-262847... 31 1.2
02_01_0258 - 1709672-1709752,1710277-1710460,1710627-1710841,171... 29 3.6
11_01_0239 - 1842576-1842741,1843264-1843379,1843667-1843738,184... 29 4.8
05_04_0324 - 20273797-20274261 29 4.8
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 287 bits (703), Expect = 1e-77
Identities = 128/202 (63%), Positives = 162/202 (80%), Gaps = 1/202 (0%)
Frame = +3
Query: 63 FQHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 242
F+HP HGS+GF P+KRS RHRGKVK+FPKDD SKP HLT+F+GYKAGMTH+VRE ++PGS
Sbjct: 6 FEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREVEKPGS 65
Query: 243 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYKC 422
K++KKE EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYKNW K
Sbjct: 66 KLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKS 125
Query: 423 KKKAFTKASXKWQDELGRKSIXKDFXXMIRYCSVVRVIAHTQMKLLK-QRQKXAHIMEIQ 599
KKKAFTK + K+ + G+K I M +Y S+VRVIAHTQ++ +K +QK AH+MEIQ
Sbjct: 126 KKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAHLMEIQ 185
Query: 600 LNGGTIXDKVKWATEHLEKPIP 665
+NGGTI DKV + + EK IP
Sbjct: 186 INGGTIADKVDYGYKFFEKEIP 207
Score = 55.2 bits (127), Expect = 6e-08
Identities = 24/52 (46%), Positives = 28/52 (53%)
Frame = +1
Query: 670 DSVFAQXEMIDCXXXXXXXXXXXXTSRWHTXXLPRXXHKGLRKVACXGXWHP 825
D+VF + EMID +RW LPR H+GLRKVAC G WHP
Sbjct: 209 DAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHP 260
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 284 bits (696), Expect = 7e-77
Identities = 127/202 (62%), Positives = 161/202 (79%), Gaps = 1/202 (0%)
Frame = +3
Query: 63 FQHPAHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 242
F+HP HGS+GF P+KRS RHRGKVK+FPKDD +KP HLT+F+GYKAGMTH+VRE ++PGS
Sbjct: 6 FEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREVEKPGS 65
Query: 243 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYKC 422
K++KKE EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYKNW K
Sbjct: 66 KLHKKETCEAVTIIETPPIVVVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKS 125
Query: 423 KKKAFTKASXKWQDELGRKSIXKDFXXMIRYCSVVRVIAHTQMKLLK-QRQKXAHIMEIQ 599
KKKAFTK + K+ + G+K I M +Y SVVRVI HTQ++ +K +QK AH+MEIQ
Sbjct: 126 KKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASVVRVIVHTQIRKMKGLKQKKAHLMEIQ 185
Query: 600 LNGGTIXDKVKWATEHLEKPIP 665
+NGGTI DKV + + EK IP
Sbjct: 186 INGGTIADKVDYGYKFFEKEIP 207
Score = 55.2 bits (127), Expect = 6e-08
Identities = 24/52 (46%), Positives = 28/52 (53%)
Frame = +1
Query: 670 DSVFAQXEMIDCXXXXXXXXXXXXTSRWHTXXLPRXXHKGLRKVACXGXWHP 825
D+VF + EMID +RW LPR H+GLRKVAC G WHP
Sbjct: 209 DAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHP 260
>01_06_0083 +
26283492-26283756,26284255-26284467,26284620-26284771,
26284884-26285157,26285277-26285485
Length = 370
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 482 NXKRFQXXDPLL*CCKSHCPHSNEAVKTATKEXSHYGNP 598
N +RF DPLL CC H P+ A T + + +G+P
Sbjct: 297 NPRRFGINDPLLACCGGHGPYHTGA--TCDRTATVWGDP 333
>02_01_0258 -
1709672-1709752,1710277-1710460,1710627-1710841,
1711321-1711390,1711525-1711607,1711720-1711884,
1712068-1712172,1713021-1713140,1713620-1713718,
1713790-1713885,1714367-1714480,1715265-1715372,
1716200-1716264,1716430-1716609,1716747-1717397,
1717497-1717565,1717639-1717858
Length = 874
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 393 RRFYKNWYKCKKKAFTKASXKWQDELGRKSIXKDFXXMIRYC 518
RRF + KC K + + ++ +LGR + K+F +IR C
Sbjct: 163 RRFTRLMQKCADKLGAEPALEFFGKLGRDTGAKEFNALIRIC 204
>11_01_0239 -
1842576-1842741,1843264-1843379,1843667-1843738,
1844057-1844143,1844479-1844582,1845250-1845307,
1845582-1845630,1846252-1846577,1846645-1846785
Length = 372
Score = 29.1 bits (62), Expect = 4.8
Identities = 20/80 (25%), Positives = 36/80 (45%)
Frame = +3
Query: 204 MTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSE 383
+++ V+E +RP K+ K+ P + V + GY+ G+ + L H
Sbjct: 292 VSYDVKEIERPEEKMVKRMTGCHARRENLDPQLQVALKGYM-VARGVNSKLASLLHHHLV 350
Query: 384 DCRRRFYKNWYKCKKKAFTK 443
+ R Y NW K ++ F+K
Sbjct: 351 EKERWQYMNWLKTLEEMFSK 370
>05_04_0324 - 20273797-20274261
Length = 154
Score = 29.1 bits (62), Expect = 4.8
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +3
Query: 141 FPKDDPSKPVHLTAFIGYKAGMTHVVRE--PDRPGSKINKKEIVEAVTIIETPPMVCVGV 314
FP D+P K VH+ G + +T ++ E P + +N EA + P CVGV
Sbjct: 60 FPPDNPQKFVHVHRVFG-ASNVTKLLNELHPYQREDAVNSL-AYEADMRLRDPVYGCVGV 117
Query: 315 VGYIETPHGLRAL 353
+ ++ H LR L
Sbjct: 118 ISVLQ--HQLRQL 128
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,461,887
Number of Sequences: 37544
Number of extensions: 455082
Number of successful extensions: 995
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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