Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_FL5_F01
         (871 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1476 - 27372288-27372310,27372508-27372586,27372818-273730...    31   1.6  
04_04_0959 + 29692740-29693035,29693102-29693267,29693433-296936...    30   2.8  
01_06_1147 + 34892415-34893702,34894051-34894676                       29   3.7  
10_02_0153 + 5915219-5915713,5916129-5916302,5916412-5916705           28   8.5  
08_02_0813 + 21459776-21461128                                         28   8.5  
06_03_0743 + 24069752-24070483,24071890-24072345                       28   8.5  
02_05_0822 + 32025992-32026696,32027237-32027314,32027547-320277...    28   8.5  

>08_02_1476 -
           27372288-27372310,27372508-27372586,27372818-27373085,
           27373346-27373410,27373611-27373757
          Length = 193

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 412 PGXGERSPRRWLQPRLAVPRQASTSV 335
           PG   R PRRW + R  +P QA+T V
Sbjct: 26  PGHRRRHPRRWTRVRDQLPTQATTKV 51


>04_04_0959 +
           29692740-29693035,29693102-29693267,29693433-29693612,
           29693703-29693771,29693888-29694088,29694187-29694240,
           29694325-29694386,29694488-29694620,29694789-29694899,
           29695008-29695104,29695638-29695714,29696129-29696194,
           29696431-29696583,29697392-29697447,29697524-29697584,
           29697656-29697766,29698010-29698144,29698217-29698447,
           29699001-29699075,29699161-29699282,29699381-29699453,
           29699538-29699642,29699728-29699895,29700079-29700148,
           29700224-29700375,29700574-29700651,29700744-29700836,
           29700961-29701098,29701237-29701276,29701350-29701423,
           29701777-29701911,29702345-29702464,29702778-29702939
          Length = 1287

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 22/81 (27%), Positives = 31/81 (38%)
 Frame = +2

Query: 83  SCGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPAFETC*HS*VRVHRANTGRSSN 262
           +CG        V H  L    V   LP R     +   A   C  + +R HR ++ RS  
Sbjct: 19  ACGLAAVAAGQVRHSPLLRAPVPGLLPERQAPEGRRPLAASRCLPTCLRRHRRSSRRSHR 78

Query: 263 ELDRQTTELERRGSGAAAVGW 325
              R++  L RR      +GW
Sbjct: 79  RCRRRSPRLWRRSGSGFLLGW 99


>01_06_1147 + 34892415-34893702,34894051-34894676
          Length = 637

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = +2

Query: 329 PRNACGGLTWYC*TRLQPPPGTTLSXPGYLXTAPSPG 439
           P N+  G  + C   LQP PGT  S P    T+PSPG
Sbjct: 210 PANSFLGNAFLCGFPLQPCPGTAPS-PSPSPTSPSPG 245


>10_02_0153 + 5915219-5915713,5916129-5916302,5916412-5916705
          Length = 320

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
 Frame = -1

Query: 397 RSPRRWLQPRLAVPRQAS-----TSVPRTPANCCSPTPPAF 290
           R+PRRW +   A  R AS     TS+     NCCS  P  F
Sbjct: 48  RAPRRWFRNTSACARFASETNMSTSIQPACYNCCSYRPMDF 88


>08_02_0813 + 21459776-21461128
          Length = 450

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = +1

Query: 295 QGEWGCSSWLVSSERLWRPDVVLLNAAATTAGDYALRARVSXNGSVSWIKRLDISXPISM 474
           +G++ C +WL +  R   P   LL+   TT      R  V+      W K+  IS P+S+
Sbjct: 237 RGDYRCPAWLSTDARRLIPR--LLDPNPTT------RISVAQLVETPWFKKTSISRPVSI 288

Query: 475 QL 480
           +L
Sbjct: 289 EL 290


>06_03_0743 + 24069752-24070483,24071890-24072345
          Length = 395

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 363 QYHVRPPQAFRGHQPTAAAPLPLRSNSVVCRSN 265
           QY  + P++ RG QPTA   LP    +  CR+N
Sbjct: 253 QYR-KGPESLRGTQPTAMLRLPCYCCAAGCRNN 284


>02_05_0822 +
           32025992-32026696,32027237-32027314,32027547-32027713,
           32027811-32027885,32028624-32028742,32028908-32029204,
           32029275-32029362,32029467-32029572,32029727-32029837,
           32030520-32030683,32031237-32031357,32031958-32032182,
           32032267-32032457,32032658-32032825,32032911-32033016,
           32033301-32033438,32033533-32033697,32033777-32033980,
           32034341-32034535,32034603-32034674,32034797-32034949
          Length = 1215

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -2

Query: 348 PPQAFR-GHQPTAAAPLPLRSNSVVCRSNS 262
           PP+ FR GH P AAAP PLR++     S S
Sbjct: 32  PPEKFRSGHLPRAAAP-PLRTDDGSVASGS 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,444,815
Number of Sequences: 37544
Number of extensions: 398015
Number of successful extensions: 1210
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)